View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_25 (Length: 233)
Name: NF5794_1D_low_25
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 37702061 - 37702282
Alignment:
| Q |
7 |
aaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagctgcttcatcttctctggagtctgaggaatcaaaatcatagcagcttca |
106 |
Q |
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| T |
37702061 |
aaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagctgcttcatcttctctggagtctgaggaatcaaaatcatagcagcttca |
37702160 |
T |
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| Q |
107 |
tcaatattcttaaccacaaacaatccattctccatatccttatcttccaaacaaaccccagcacnnnnnnncgcaactttatccactctctccgccaaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
37702161 |
tcaatattcttaaccacaaacaatccattctccatatccttatcttccaaacaaaccccagcacaacaaaacgcaactttctccactctctccgccaaca |
37702260 |
T |
|
| Q |
207 |
aaaccaccataactaacaccaa |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
37702261 |
aaaccaccataactaacaccaa |
37702282 |
T |
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