View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_29 (Length: 225)
Name: NF5794_1D_low_29
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 41786749 - 41786554
Alignment:
| Q |
31 |
taccgtattagacaagttttagattgtcgaaataactcttttctcaactattaa-ttaagggaaaattctaaagcatatcacagtgtctcttccacactc |
129 |
Q |
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| T |
41786749 |
taccgtattagacaagttttagattgtcgaaataactcttttctcaactattaaattaagggaaaattctaaagcatatcacagtgtatcttccacactc |
41786650 |
T |
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| Q |
130 |
tattttctcacaatgtcactaatatgttaaatttcgaagagttacattaaataaaagaaatatttgaaaatatcaattgatgaggatgagagtcag |
225 |
Q |
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| T |
41786649 |
tattttctcacaatgtcactaatatgttaaatttcgaagagttacattacataaaagaaatatttgaaaatatcaattgatgaggatgagagtcag |
41786554 |
T |
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