View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5794_1D_low_3 (Length: 402)
Name: NF5794_1D_low_3
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 39458568 - 39458206
Alignment:
| Q |
16 |
ggacatcaaagaacaattgagaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtgggtgattattccttcacctggtgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
39458568 |
ggacatcaaagaacaattgagaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtgg-tgattatctcttcacctggtgt |
39458470 |
T |
|
| Q |
116 |
cggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaaca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458469 |
tggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaaca |
39458370 |
T |
|
| Q |
216 |
gaaacagatgtctacactaaatcccttcccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaactccaatataacttccg |
315 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39458369 |
gaaatagatgtctacactaaatcccttgccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaactccaatataacttccg |
39458270 |
T |
|
| Q |
316 |
gcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaa |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39458269 |
gcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaa |
39458206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 39480270 - 39480452
Alignment:
| Q |
18 |
acatcaaagaacaattgagaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtgggtgattattccttcacctggtgtcg |
117 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
39480270 |
acatcaaagaacaatagaaaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtgg-tgattatcccttcacctggtgttg |
39480368 |
T |
|
| Q |
118 |
gtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccgtctccgaataactatcttggtcatgaaat |
201 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
39480369 |
gtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttggtcatgaaat |
39480452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 67 - 378
Target Start/End: Original strand, 39486405 - 39486721
Alignment:
| Q |
67 |
atccaggatgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtga |
166 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
39486405 |
atccaagatgaagaaagcagaagtgg-tgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtga |
39486503 |
T |
|
| Q |
167 |
taaccgtctccgaataactatcttggtcatgaaatttccacacacaacaga-aac-----agatgtctacactaaatcccttcccatcgacgattctctt |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
39486504 |
taaccgtctccgaataaccatcttggtcatcaaattcccacacaccacagatgacgatgtcgatgtctacacaaaatcccttcccatttccgattctctc |
39486603 |
T |
|
| Q |
261 |
aacattgtcgaccttccagaatgttctcttcccccaaactccaatataacttccggcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaag |
360 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||| || | | || | |||| | |||||| ||||||||||||||||||||||| ||| |
|
|
| T |
39486604 |
caggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatgaacgctctccttgaagctcagaaaccaaacgtcaaacaag |
39486703 |
T |
|
| Q |
361 |
ccgtctccaacctcacta |
378 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
39486704 |
ctgtatccaacctcacta |
39486721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 299
Target Start/End: Original strand, 39471983 - 39472213
Alignment:
| Q |
68 |
tccaggatgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgat |
167 |
Q |
| |
|
|||| |||||||||||||||||||| || || | |||| || | || |||||| ||||||| | ||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
39471983 |
tccaagatgaagaaagcagaagtgg-tgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgat |
39472081 |
T |
|
| Q |
168 |
aaccgtctccgaataactatcttggtcatgaaatttccacacacaacagaaacagatgtctacactaaatcccttcccatcgacgattctcttaacattg |
267 |
Q |
| |
|
|||||||||||||||||| | || || || ||||| ||||||| |||||||| ||||||||||||||||||||||| ||| |||||| || |||| |
|
|
| T |
39472082 |
aaccgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatca |
39472181 |
T |
|
| Q |
268 |
tcgaccttccagaatgttctcttcccccaaac |
299 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |
|
|
| T |
39472182 |
tcaaccttccagaatgttctcttgccccaaac |
39472213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 73 - 378
Target Start/End: Original strand, 39450952 - 39451259
Alignment:
| Q |
73 |
gatgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccg |
172 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| |||||||| | ||||||||||||||||| ||||| || |||||||||||||| |||||||||| |
|
|
| T |
39450952 |
gatgaagaaagcagaagtgg-tgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccg |
39451050 |
T |
|
| Q |
173 |
tctccgaataactatcttggtcatgaaatttccacacacaacagaaacagatgtctacactaaatcccttcccatcgacgattctcttaacattgtcgac |
272 |
Q |
| |
|
||||||| ||||| | || || || ||||| ||||| | | |||||| |||||| |||||||||||||||| ||| |||||||| ||||| || || |
|
|
| T |
39451051 |
tctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatcaac |
39451150 |
T |
|
| Q |
273 |
cttccagaatgttctcttcccccaaactccaatataacttccg---gcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctcca |
369 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||| | || || |||| | ||||||| |||||||||||||||| |||||| ||||||| || | |
|
|
| T |
39451151 |
cttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttcta |
39451250 |
T |
|
| Q |
370 |
acctcacta |
378 |
Q |
| |
|
||||||||| |
|
|
| T |
39451251 |
acctcacta |
39451259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 375
Target Start/End: Original strand, 39454592 - 39454892
Alignment:
| Q |
74 |
atgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccgt |
173 |
Q |
| |
|
||||||||||||||||||| || |||| ||||| |||||||| || ||| ||||||||||||| || || || || |||||||||||| ||||||||||| |
|
|
| T |
39454592 |
atgaagaaagcagaagtgg-tgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgt |
39454690 |
T |
|
| Q |
174 |
ctccgaataactatcttggtcatgaaatttccacacacaacagaaacagatgtctacactaaatcccttcccatcgacgattctcttaacattgtcgacc |
273 |
Q |
| |
|
|||||||||||| | || ||| | |||||||||||| | || ||||| ||||| |||| |||||| ||||| ||| |||||| | ||| || ||| |
|
|
| T |
39454691 |
ctccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaacc |
39454790 |
T |
|
| Q |
274 |
ttccagaatgttctcttcccccaaactccaatataacttccggcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacct |
373 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||| | |||| |||| | || ||| ||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
39454791 |
ttccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaacct |
39454890 |
T |
|
| Q |
374 |
ca |
375 |
Q |
| |
|
|| |
|
|
| T |
39454891 |
ca |
39454892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 378
Target Start/End: Original strand, 39475433 - 39475765
Alignment:
| Q |
48 |
tcacactgagtaagtgcatatccaggatgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaa |
147 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||||||||| || |||| |||| || ||| | | |||||| ||||||| || || |||| | |
|
|
| T |
39475433 |
tcacactgatcaagtgtatatccaagatgaagaaagcagaagtgg-tgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtga |
39475531 |
T |
|
| Q |
148 |
agcttctaatcaacagtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaacagaaacagatgtctacactaaatcccttcccat |
247 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| | || || || ||||| ||||||| |||||||| |||||| |||||||||||||||| || |
|
|
| T |
39475532 |
agcttctaatcaatcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctat |
39475631 |
T |
|
| Q |
248 |
cgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaactccaatataacttccgg---catggtggatctcctcaaagctcagaaa |
344 |
Q |
| |
|
| || ||||| ||||| || ||||||||||| |||||||||||||||| || || | || | |||| | ||||||| ||||||||||| |
|
|
| T |
39475632 |
ctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaa |
39475731 |
T |
|
| Q |
345 |
ccaaacgtcaaaaaagccgtctccaacctcacta |
378 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||| |
|
|
| T |
39475732 |
ccaaacgtaaaacaagctgtctccaacctcacta |
39475765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 74 - 294
Target Start/End: Complemental strand, 39464750 - 39464531
Alignment:
| Q |
74 |
atgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccgt |
173 |
Q |
| |
|
||||||||||||||||| | || |||| |||| || | ||| |||||||||||||| |||| || ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
39464750 |
atgaagaaagcagaagtag-tgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgt |
39464652 |
T |
|
| Q |
174 |
ctccgaataactatcttggtcatgaaatttccacacacaacagaaacagatgtctacactaaatcccttcccatcgacgattctcttaacattgtcgacc |
273 |
Q |
| |
|
||||||||||| ||||| ||||| ||| | ||||| || ||||| | |||||||||||||||||| ||||||| ||||||||||| | || ||| |
|
|
| T |
39464651 |
ctccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaacc |
39464552 |
T |
|
| Q |
274 |
ttccagaatgttctcttcccc |
294 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
39464551 |
ttccagaagtttctcttcccc |
39464531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 120 - 378
Target Start/End: Original strand, 39460248 - 39460506
Alignment:
| Q |
120 |
catctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaacagaaa |
219 |
Q |
| |
|
||||||| ||||||||| || || ||||||||||||| |||| ||||||| || |||||||| ||| || | ||||||||| | ||| ||||| ||||| |
|
|
| T |
39460248 |
catctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaat |
39460347 |
T |
|
| Q |
220 |
cagatgtctacactaaatcccttcccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaactccaatataacttccggcat |
319 |
Q |
| |
|
| ||||| |||||||||| ||||||| |||||||| |||| || ||||||||||| |||||||||||||||| | | ||||||| | || |
|
|
| T |
39460348 |
ccgatgttaacactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaacttccagaat |
39460447 |
T |
|
| Q |
320 |
ggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta |
378 |
Q |
| |
|
| ||| | ||||| ||||||||||| ||||||||||| ||||||| || || ||||||| |
|
|
| T |
39460448 |
gatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcacta |
39460506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 39470931 - 39470800
Alignment:
| Q |
117 |
ggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaacag |
216 |
Q |
| |
|
|||||||||||||| || | || || || ||||||||||||||| ||||||||| ||| |||||||| |||| ||||||||||| |||||||| ||| |
|
|
| T |
39470931 |
ggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcctctgaataactgtcttagtcatgaaattcccacacactgcag |
39470832 |
T |
|
| Q |
217 |
aaacagatgtctacactaaatcccttcccatc |
248 |
Q |
| |
|
|| | ||||||||| |||||||| |||||||| |
|
|
| T |
39470831 |
aatctgatgtctacgctaaatccattcccatc |
39470800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 43312732 - 43312598
Alignment:
| Q |
71 |
aggatgaagaaagcagaagtgggtgattattccttcacctggtgtcggtcatctagtttccaccctcgaatttgcaaagcttctaatcaacagtgataac |
170 |
Q |
| |
|
|||||||||||| |||||||| || |||| ||||| || ||||| || ||| |||| |||||||| || ||||| |||||||| |||||| |||||||| |
|
|
| T |
43312732 |
aggatgaagaaactagaagtgg-tgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataac |
43312634 |
T |
|
| Q |
171 |
cgtctccgaataactatcttggtcatgaaatttcca |
206 |
Q |
| |
|
|||||||| |||| |||||||||| || |||||| |
|
|
| T |
43312633 |
cgtctccgtgtaaccgtcttggtcatcaagtttcca |
43312598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 39483339 - 39483516
Alignment:
| Q |
201 |
tttccacacacaacagaaacagatgtctacactaaatcccttcccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaact |
300 |
Q |
| |
|
|||||| |||||||| |||| |||||||| ||||||||||||||||| |||| |||||| | || ||||||||||||||| |||||||||||||| |
|
|
| T |
39483339 |
tttccatacacaacataaaccaatgtctaccctaaatcccttcccatctttgattttcttaatgtaatcaaccttccagaatgttatcttcccccaaact |
39483438 |
T |
|
| Q |
301 |
ccaatataacttccggcatggtggatctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta |
378 |
Q |
| |
|
| || || ||| | ||| | |||||| ||||||||||||||||| | | | |||| |||||||||||||||| |
|
|
| T |
39483439 |
tcgatctagtttctgccatcaacgctctccttgaagctcagaaaccaaacataatacaagctgtctccaacctcacta |
39483516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 39470722 - 39470670
Alignment:
| Q |
326 |
tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta |
378 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
39470722 |
tctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcacta |
39470670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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