View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_32 (Length: 218)
Name: NF5794_1D_low_32
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 26181201 - 26181061
Alignment:
| Q |
72 |
gggaagagttcatcaaacttggggcataccatcctcctttaactcacaatgaaggaaagcattttccatgtttcattgtttaatgtgccgccctttaatg |
171 |
Q |
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| T |
26181201 |
gggaagagttcatcaaacttggggcataccatcctcctttaactcacaatcaaggaaagcattttccatgtttcattgtttaatgtgccgccctttaatg |
26181102 |
T |
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| Q |
172 |
atagcgaaggcaatgagcatcctcacagtagccatttcagc |
212 |
Q |
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| T |
26181101 |
atagcaaaggcaatgagcatcctcacagtagccatttcagc |
26181061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 26187241 - 26187088
Alignment:
| Q |
64 |
cctgtgaagggaagagttcatcaaacttggggcat---------accatcctcctttaactcacaatgaaggaaagcattttccatgtttcattgtttaa |
154 |
Q |
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|||| |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
26187241 |
cctgcgaagggaagagttcatgaaacttggggcatggtcatgtaaacatcctcctttaactcacaatgaaggaaagcatttttcatgtttcattgttgaa |
26187142 |
T |
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| Q |
155 |
tgtgccgccctttaatgatagcgaaggcaatgagcatcctcacagtagccattt |
208 |
Q |
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| T |
26187141 |
tgtgccgccctttaatgatcgcaaaggcaatgagcatcctcatagtagccattt |
26187088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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