View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_36 (Length: 207)
Name: NF5794_1D_low_36
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 12552079 - 12551888
Alignment:
| Q |
12 |
atgaaggttgatgataactctttcttcttcatctgtgaatttccccctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttccca |
111 |
Q |
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| T |
12552079 |
atgaaggttgatgataactctttcttcttcatcagtgaatttccctctcttgatatcaggcctcaaataatttgtccaccttaacctacaactcttccca |
12551980 |
T |
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| Q |
112 |
cacctattcaaaccagcacgttttgaaagtgttccccaatttccatggccatgtttgttgatataatcaatcagcttctcatcttcttcttg |
203 |
Q |
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| T |
12551979 |
cacctattcaaaccagcacgttttgaaagtgttccccaatttccatggccatgtttgttgatataatcaatcagcttctcatcttcttcttg |
12551888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 1281415 - 1281336
Alignment:
| Q |
34 |
tcttcttcatctgtgaatttccccctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccaca |
113 |
Q |
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| T |
1281415 |
tcttcttcatcagaaaatttccctcttttaatatcaggacttaaataatttgtccatcttaacctacaactctttccaca |
1281336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 2590895 - 2590846
Alignment:
| Q |
67 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacct |
116 |
Q |
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| T |
2590895 |
tcaggccttaaataatttatccatctcaacctacaactcttaccacacct |
2590846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 30007328 - 30007195
Alignment:
| Q |
34 |
tcttcttcatctgtgaatttccccctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgtt |
133 |
Q |
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| T |
30007328 |
tcttcttcatctgtgaattgtcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagct |
30007229 |
T |
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| Q |
134 |
ttgaaagtgttccccaatttccatggccatgttt |
167 |
Q |
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| T |
30007228 |
ttggaagtgctctccaacttccatggccatgttt |
30007195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 33695415 - 33695345
Alignment:
| Q |
49 |
aatttccccctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctatt |
119 |
Q |
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| T |
33695415 |
aattttcctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatctatt |
33695345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 37962917 - 37962859
Alignment:
| Q |
67 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaacc |
125 |
Q |
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||||||||||| |||||| |||| |||||||| ||||||||||||||||| | |||||| |
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| T |
37962917 |
tcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacc |
37962859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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