View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_1D_low_6 (Length: 360)

Name: NF5794_1D_low_6
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_1D_low_6
NF5794_1D_low_6
[»] chr4 (1 HSPs)
chr4 (1-279)||(35071611-35071904)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 35071904 - 35071611
Alignment:
Q  1 ctgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaattatgaaaagtt---------------ga 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||               ||    
T  35071904 ctgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaataatgaacagttctgttcgtgtggattga 35071805  T
Q  86 aatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataagcat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35071804 aatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataagcat 35071705  T
Q  186 taatacgggttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaattattattgatgtccat 279  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35071704 taatacgagttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaattattattaatgtccat 35071611  T

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