View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_7 (Length: 351)
Name: NF5794_1D_low_7
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 21243006 - 21242674
Alignment:
| Q |
7 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatcca |
106 |
Q |
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| T |
21243006 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatcca |
21242907 |
T |
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| Q |
107 |
tgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatc |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242906 |
tgtttatcatcaacgacgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatc |
21242807 |
T |
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| Q |
207 |
ggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242806 |
ggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcatta |
21242707 |
T |
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| Q |
307 |
cctattagatataaagtttgttatgtagagaat |
339 |
Q |
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| T |
21242706 |
cctattagatataaagtttgttatgtagagaat |
21242674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 21258772 - 21258450
Alignment:
| Q |
7 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatcca |
106 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||| |
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| T |
21258772 |
cttagctgcgcgtatgttataaccgccaatctaaacacatgaaacatcggtaaaacgcagaggaacacatt---taattcccctgctaaatcatcatcca |
21258676 |
T |
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| Q |
107 |
tgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatc |
206 |
Q |
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| T |
21258675 |
tgtttatcatcaatgaagtcgcgatgaagttcttgtgggtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt-------tgtc |
21258583 |
T |
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| Q |
207 |
ggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcatta |
306 |
Q |
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||||||||||| | | ||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||| | |||| ||||||||| |
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| T |
21258582 |
agtctgtttcacgttgctttctggtatttctgttacttccccagctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttgcatta |
21258483 |
T |
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| Q |
307 |
cctattagatataaagtttgttatgtagagaat |
339 |
Q |
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||||| |||||||||||||||||| ||| |||| |
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| T |
21258482 |
cctatcagatataaagtttgttatatagcgaat |
21258450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 21254269 - 21253939
Alignment:
| Q |
7 |
cttagctgtgcgtatgttataaccgccaatccaaacacatgaa---acatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcat |
103 |
Q |
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|||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
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| T |
21254269 |
cttagctgcgcgtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgt |
21254170 |
T |
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| Q |
104 |
ccatgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgt |
203 |
Q |
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||||||| ||||| |||| | || |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
21254169 |
ccatgttaatcattaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgt |
21254070 |
T |
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| Q |
204 |
atcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgc- |
302 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||| |||||||||||| |||||||||| | |
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| T |
21254069 |
atcgctttgtttcacatcgttttctggtaattctgttacttctcatgctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaacccgttaca |
21253970 |
T |
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| Q |
303 |
---attacctattagatataaagtttgttat |
330 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
21253969 |
ttaattacctattagatgtaaagtttgttat |
21253939 |
T |
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