View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_8 (Length: 331)
Name: NF5794_1D_low_8
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_8 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 4293 - 4593
Alignment:
| Q |
10 |
ctggtagtgaatgaacttgttggttgaggtttggagacatgttgactcaattgtcggatggtgaaagagataactgaccaggtagtaggttaagtataca |
109 |
Q |
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| T |
4293 |
ctggtagtgaatgaacttgttggttgaggtttggagacatgttgactcaattgtcggatggtgaaagagataactgaccaggtagtaggttaagtataca |
4392 |
T |
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| Q |
110 |
attcatctacacttggattcatgatcatcaaatacaaatcatgtttcaactcaacccactgccgaaccgattctttgtcaatctgcatccattgtaggct |
209 |
Q |
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| T |
4393 |
attcatctacacttggattcatgatcatcaaatacaaatcatgtttcaactcaacccactgccgaaccggttctttgtcaatctgcatccattgtaggct |
4492 |
T |
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| Q |
210 |
aggacatatttctaattaagattctacctcctccctatggctacctctctcta-gtccctcttcattgtaattttcctgatgattctactacctccttcc |
308 |
Q |
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| T |
4493 |
aggacatatttctaattaagattctacctcctccctatggctacctctctctaggtccctcttcattgtaattttcctgatgattctactacctccttcc |
4592 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
4593 |
t |
4593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 30272962 - 30272888
Alignment:
| Q |
238 |
tcctccctatggctacctc--tctcta-gtccctcttcattgtaattttcctgatgattctactacctccttcct |
309 |
Q |
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| T |
30272962 |
tcctccctatggctctctccctctctatgtccttcttcattgtaatcttcctgatgattcttctacctccttcct |
30272888 |
T |
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