View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_high_12 (Length: 256)
Name: NF5794_2D_high_12
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 40552786 - 40552559
Alignment:
| Q |
20 |
gaaactaaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatat |
119 |
Q |
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| T |
40552786 |
gaaaccaaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatat |
40552687 |
T |
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| Q |
120 |
gccatattattgttatatatacatcaccagataatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattac |
219 |
Q |
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| T |
40552686 |
gccatattattgttatttatacatcaccagataatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattac |
40552587 |
T |
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| Q |
220 |
agaaagataaaacagatacgaagaataa |
247 |
Q |
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| T |
40552586 |
agaaagataaaacagatacgaagaataa |
40552559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 22137753 - 22137532
Alignment:
| Q |
26 |
aaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccata |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22137753 |
aaccatagtcataaaaataaataaatcttttgacccaccaaatataatggggacgtggaattaagacattaaacataaacaccaaattccatatgccata |
22137654 |
T |
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| Q |
126 |
ttattgttatatatacatcaccagataatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaag |
225 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22137653 |
ttattgttatttatacatcaccagataatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatattgttatcatattacagaaag |
22137554 |
T |
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| Q |
226 |
ataaaacagatacgaagaataa |
247 |
Q |
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| T |
22137553 |
ataaaacagatacgaagaataa |
22137532 |
T |
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