View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_2D_high_14 (Length: 237)

Name: NF5794_2D_high_14
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_2D_high_14
NF5794_2D_high_14
[»] chr1 (4 HSPs)
chr1 (23-237)||(34989448-34989662)
chr1 (35-237)||(2305506-2305708)
chr1 (23-182)||(34975613-34975772)
chr1 (30-181)||(34980400-34980551)
[»] chr3 (13 HSPs)
chr3 (30-237)||(22657087-22657294)
chr3 (34-237)||(22620935-22621138)
chr3 (130-232)||(22648210-22648312)
chr3 (75-235)||(22615291-22615451)
chr3 (37-232)||(21930666-21930861)
chr3 (75-232)||(22115368-22115525)
chr3 (102-207)||(22431224-22431329)
chr3 (128-187)||(30989376-30989435)
chr3 (102-211)||(22367974-22368083)
chr3 (102-211)||(22630485-22630594)
chr3 (128-232)||(22034853-22034957)
chr3 (75-211)||(22458536-22458672)
chr3 (75-211)||(22481517-22481653)
[»] scaffold1439 (2 HSPs)
scaffold1439 (87-181)||(1714-1808)
scaffold1439 (165-237)||(1614-1686)
[»] chr5 (2 HSPs)
chr5 (108-191)||(40580244-40580327)
chr5 (137-237)||(40580333-40580433)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 34989448 - 34989662
Alignment:
23 taaaggaatcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
34989448 taaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaac 34989547  T
123 acaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgta 222  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
34989548 acaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagatatttattaccacaagaaataaggatgttgccatgtattgta 34989647  T
223 agaaatcttcgttta 237  Q
    |||||||||| ||||    
34989648 agaaatcttcattta 34989662  T

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Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 2305708 - 2305506
Alignment:
35 tgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgg 134  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
2305708 tgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttgtgtttgataatgtatggaacacaagtttttgg 2305609  T
135 gatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgt 234  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |    
2305608 gatgagattgaatatgctatgagtgatcataaaaatggtagtaagatatttattaccacaagaaatatggatgttgccatatattgtaagaaatcttctt 2305509  T
235 tta 237  Q
    |||    
2305508 tta 2305506  T

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Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 34975613 - 34975772
Alignment:
23 taaaggaatcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
34975613 taaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaac 34975712  T
123 acaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagata 182  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
34975713 acaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagata 34975772  T

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Target: chr1; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 34980400 - 34980551
Alignment:
30 atcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtt 129  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
34980400 atcactgaaatggatcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtt 34980499  T
130 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 181  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
34980500 tttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 34980551  T

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Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 22657294 - 22657087
Alignment:
30 atcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtt 129  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
22657294 atcactgaaatggatcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacaaaagtt 22657195  T
130 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc 229  Q
    ||||||||||||||||||||| |||  ||||| |||||||||| ||||||||||||||||| | |||||||| |||||||||  ||||||||||||||||    
22657194 tttgggatgagattgaatatgctgttggtgatcataaaaatgggagtaagatatttattacaacaagaaatatggatgttgcggtgtattgtaagaaatc 22657095  T
230 ttcgttta 237  Q
    ||| ||||    
22657094 ttctttta 22657087  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 237
Target Start/End: Complemental strand, 22621138 - 22620935
Alignment:
34 ctgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttg 133  Q
    |||||||||||| |||  ||||||||||| |||||| |||  |||||||  ||||||||||| ||||||| |||||||||||||||| || |  ||||||    
22621138 ctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggtatgtttttgtatttgatgatgtatggaccatagatttttg 22621039  T
134 ggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcg 233  Q
    | |||| || ||  ||| ||||| |||| |||||||||| ||||||||||| ||||| | ||||| || ||||||||| || |||||||| ||||||||     
22621038 gaatgaaatagagcatgttgtgattgataataaaaatgggagtaagatattgattacaacaagaagtatggatgttgctatttattgtaaaaaatcttct 22620939  T
234 ttta 237  Q
    ||||    
22620938 ttta 22620935  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 22648312 - 22648210
Alignment:
130 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc 229  Q
    ||||||||||||||||| |||   ||| |||| |||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||    
22648312 tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatc 22648213  T
230 ttc 232  Q
    |||    
22648212 ttc 22648210  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 22615451 - 22615291
Alignment:
75 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 174  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||    ||||||| |||||||||||| || ||| | |||| |||||||||| |    
22615451 tacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaa 22615352  T
175 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtt 235  Q
    ||||||||||||| || | ||| ||||  ||||||||  | | |||||||| |||||||||    
22615351 gtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgtt 22615291  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 21930666 - 21930861
Alignment:
37 aaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttggga 136  Q
    |||||||||||||  |||||| | ||||  ||| ||| | ||||||||||||||||||| || | |||||||||||||| |||||   |  |||||||||    
21930666 aaatggatcgaggatcattgactgctgaagtgagaaaatgcttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacatttttggga 21930765  T
137 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttc 232  Q
    ||| ||||||| || ||  | ||||  ||||||||| |||||||||||||| || | ||| || | ||||||||   ||| |||||| ||||||||    
21930766 tgatattgaatttgctgcaattgatagtaaaaatggaagtaagatatttataacaacaaggaacatggatgttgtggtgtcttgtaaaaaatcttc 21930861  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 22115368 - 22115525
Alignment:
75 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 174  Q
    ||||||||||||||||||||  || | |||||||||||||| |||||   |  |||||||||||| ||||||| |  ||| | ||||  ||||||||| |    
22115368 tacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaa 22115467  T
175 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttc 232  Q
    ||||||||||||| || | |||||| | ||||||||   ||| |||||| ||||||||    
22115468 gtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaatcttc 22115525  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 22431329 - 22431224
Alignment:
102 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 201  Q
    |||||||||||||||||| |  ||| ||||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
22431329 gtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22431230  T
202 aggatg 207  Q
    ||||||    
22431229 aggatg 22431224  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 30989435 - 30989376
Alignment:
128 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttat 187  Q
    |||||||||||| ||||||| || ||| | |||| |||||||||| ||||||||||||||    
30989435 tttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttat 30989376  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 22368083 - 22367974
Alignment:
102 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 201  Q
    |||||||||||||||||| || ||  ||||||| |||| ||||||| |  | ||| |||| | ||||||||| |||||||||| || || | ||||||      
22368083 gtgtttgatgatgtatgggactcacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacg 22367984  T
202 aggatgttgc 211  Q
    ||||||||||    
22367983 aggatgttgc 22367974  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 22630594 - 22630485
Alignment:
102 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 201  Q
    |||||||||||||||||| |  ||   |||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
22630594 gtgtttgatgatgtatgggaggcacaattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22630495  T
202 aggatgttgc 211  Q
    ||||||||||    
22630494 aggatgttgc 22630485  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 22034853 - 22034957
Alignment:
128 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa 227  Q
    |||||||||||| ||||||| |  ||| | ||||  ||||||||| |||||||||||||| || | |||||| | ||||||||   ||| |||||| |||    
22034853 tttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaa 22034952  T
228 tcttc 232  Q
    |||||    
22034953 tcttc 22034957  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 22458672 - 22458536
Alignment:
75 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 174  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
22458672 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22458573  T
175 gtaagatatttattaccagaagaaataaggatgttgc 211  Q
    |||||||||| || || | |||||| | |||||||||    
22458572 gtaagatattaatcacaacaagaaacatggatgttgc 22458536  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 22481653 - 22481517
Alignment:
75 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 174  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
22481653 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22481554  T
175 gtaagatatttattaccagaagaaataaggatgttgc 211  Q
    |||||||||| || || | |||||| | |||||||||    
22481553 gtaagatattaatcacaacaagaaacatggatgttgc 22481517  T

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Target: scaffold1439 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 1808 - 1714
Alignment:
87 aagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 181  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
1808 aagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 1714  T

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Target: scaffold1439; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 1686 - 1614
Alignment:
165 aaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttta 237  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||||||||||| ||||    
1686 aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttctttta 1614  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 40580244 - 40580327
Alignment:
108 gatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc 191  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
40580244 gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc 40580327  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 40580333 - 40580433
Alignment:
137 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttt 236  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||  ||||| || |||||||||  ||||||||||||||| ||| |||    
40580333 tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacctcaagaagtatggatgttgcagtgtattgtaagaaattttctttt 40580432  T
237 a 237  Q
    |    
40580433 a 40580433  T

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