View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_high_3 (Length: 536)
Name: NF5794_2D_high_3
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 20 - 536
Target Start/End: Complemental strand, 46991997 - 46991481
Alignment:
| Q |
20 |
tgattagagcatgcaatagcccataatcagtaaaccaccacatccagtatagcccacgtatgatccccaagtgactcctgattgtttgtgagtgtctggc |
119 |
Q |
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| T |
46991997 |
tgattagagcatgcaatagcccataatcagtaaaccaccacatccagtatagcccacgtatgatccccaagtgactcctgattgtttgtgagtgtctggc |
46991898 |
T |
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| Q |
120 |
tccaaacagtaaaagatataatccaagattaatatggttaagcagcctctaaatgttgccttcctgcttcggcaattgaatctgagaattagatcatgct |
219 |
Q |
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| T |
46991897 |
tccaaacagtaaaagatataatccaagattaatatggttaagcagcctctaaatgttgccttcctgcttcggcaattgcatctgagaattagatcatgct |
46991798 |
T |
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| Q |
220 |
caataatcaatgctctgcaagttgattcagcaggagactgaaaatcttttaattcctccgagaagttattcagcctgggtatactctaacaacatgtgtg |
319 |
Q |
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| T |
46991797 |
caataatcaatgctctgcaagttgattcagcaggagactgaaaatcttttaattcctccgagaagttattcagcctgggtatactctaacaacatgtgtg |
46991698 |
T |
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| Q |
320 |
gagagcggtagattttaacaagcgtccaatacagaatctcttccacttcaagctctccttctgctcttgcagcatatatatcttcacatattgccatcaa |
419 |
Q |
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| T |
46991697 |
gagagcggtagattttaacaagcgtccaatacagaatctcttccacttcaagctctccttctgctcttgcagcatatatatcttcacatattgccatcaa |
46991598 |
T |
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| Q |
420 |
tctgcatcgatgaacacattatagaaattatcagtatccacttcatttgatttcccaataaaacagaagggagcccattagtgaacattcatcgtaaaat |
519 |
Q |
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| T |
46991597 |
tctgcatcgatgaacacattatagaaattatcagtatccacttcatttgatttcccaataaaacagaagggagcccattagtgaacattcatcgtaaaat |
46991498 |
T |
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| Q |
520 |
agatcaattgcttgagc |
536 |
Q |
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| T |
46991497 |
agatcaattgcttgagc |
46991481 |
T |
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