View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_2D_low_10 (Length: 476)

Name: NF5794_2D_low_10
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_2D_low_10
NF5794_2D_low_10
[»] chr2 (23 HSPs)
chr2 (80-337)||(25715219-25715479)
chr2 (82-288)||(9847462-9847674)
chr2 (133-269)||(25217884-25218019)
chr2 (135-252)||(39447104-39447220)
chr2 (130-288)||(15995204-15995362)
chr2 (133-268)||(33452537-33452671)
chr2 (134-288)||(34517006-34517159)
chr2 (133-267)||(36949039-36949172)
chr2 (154-268)||(44465843-44465956)
chr2 (131-288)||(5507321-5507480)
chr2 (133-268)||(45153885-45154019)
chr2 (133-248)||(17474893-17475007)
chr2 (418-476)||(37981785-37981843)
chr2 (133-268)||(32187963-32188098)
chr2 (135-262)||(41510524-41510651)
chr2 (133-201)||(36874977-36875045)
chr2 (133-207)||(4268332-4268406)
chr2 (80-118)||(25715641-25715679)
chr2 (82-118)||(9847254-9847290)
chr2 (130-201)||(33366920-33366990)
chr2 (205-268)||(41855054-41855117)
chr2 (81-118)||(34519578-34519615)
chr2 (133-201)||(41854993-41855061)
[»] chr1 (34 HSPs)
chr1 (80-297)||(43319236-43319459)
chr1 (130-268)||(32817707-32817844)
chr1 (133-288)||(18583643-18583798)
chr1 (148-297)||(27794751-27794899)
chr1 (133-238)||(44573195-44573299)
chr1 (130-267)||(40908030-40908166)
chr1 (133-268)||(34162820-34162955)
chr1 (131-268)||(6223834-6223971)
chr1 (135-288)||(33611511-33611664)
chr1 (133-262)||(15069941-15070069)
chr1 (133-268)||(41584769-41584903)
chr1 (136-288)||(23442643-23442795)
chr1 (130-288)||(30829562-30829709)
chr1 (133-296)||(17000277-17000438)
chr1 (81-268)||(38950207-38950387)
chr1 (130-268)||(45567972-45568110)
chr1 (133-262)||(40650774-40650903)
chr1 (130-267)||(42545895-42546030)
chr1 (204-268)||(38885165-38885229)
chr1 (131-201)||(800899-800969)
chr1 (154-247)||(7011156-7011249)
chr1 (135-207)||(28866732-28866803)
chr1 (82-118)||(43319027-43319063)
chr1 (134-268)||(49677419-49677542)
chr1 (148-252)||(52744931-52745034)
chr1 (418-465)||(42657879-42657926)
chr1 (133-268)||(49786195-49786329)
chr1 (136-206)||(34006246-34006316)
chr1 (81-118)||(38950832-38950869)
chr1 (130-201)||(24471411-24471481)
chr1 (134-201)||(32542388-32542455)
chr1 (133-207)||(45046950-45047023)
chr1 (164-201)||(9446184-9446221)
chr1 (221-296)||(24471490-24471566)
[»] chr8 (24 HSPs)
chr8 (80-288)||(41530574-41530789)
chr8 (92-334)||(36404208-36404453)
chr8 (133-268)||(8885552-8885686)
chr8 (135-250)||(27928042-27928156)
chr8 (133-268)||(44106149-44106283)
chr8 (133-266)||(3094609-3094741)
chr8 (130-267)||(21004317-21004452)
chr8 (418-476)||(24318080-24318138)
chr8 (80-246)||(7971037-7971208)
chr8 (134-268)||(9073430-9073563)
chr8 (133-259)||(31519991-31520116)
chr8 (134-267)||(16310526-16310658)
chr8 (137-258)||(28916719-28916839)
chr8 (133-262)||(42280990-42281121)
chr8 (131-207)||(35676635-35676711)
chr8 (49-118)||(24627650-24627712)
chr8 (134-252)||(37248500-37248617)
chr8 (221-268)||(40994745-40994792)
chr8 (133-199)||(11698385-11698451)
chr8 (140-262)||(34853262-34853382)
chr8 (82-118)||(41530963-41530999)
chr8 (80-184)||(31234774-31234883)
chr8 (221-269)||(17120077-17120125)
chr8 (220-268)||(28219201-28219249)
[»] chr3 (42 HSPs)
chr3 (81-267)||(48303918-48304109)
chr3 (80-339)||(45244243-45244504)
chr3 (131-288)||(51258308-51258464)
chr3 (133-268)||(47740031-47740165)
chr3 (134-266)||(49096327-49096457)
chr3 (130-288)||(47301924-47302082)
chr3 (130-268)||(38977844-38977981)
chr3 (133-267)||(51540713-51540848)
chr3 (130-288)||(3937293-3937451)
chr3 (418-475)||(10215904-10215961)
chr3 (418-475)||(10225533-10225590)
chr3 (154-267)||(34821516-34821628)
chr3 (133-268)||(3902905-3903039)
chr3 (136-297)||(3352168-3352329)
chr3 (134-268)||(28872929-28873062)
chr3 (418-476)||(45926807-45926865)
chr3 (133-268)||(35142003-35142134)
chr3 (162-267)||(47123033-47123137)
chr3 (162-267)||(47130399-47130503)
chr3 (133-266)||(50716180-50716312)
chr3 (133-266)||(50796535-50796667)
chr3 (418-472)||(10104759-10104813)
chr3 (133-247)||(39149757-39149869)
chr3 (133-268)||(2358721-2358856)
chr3 (204-335)||(42936527-42936659)
chr3 (131-268)||(30721903-30722043)
chr3 (220-288)||(33700662-33700731)
chr3 (133-205)||(34821442-34821514)
chr3 (133-252)||(501240-501358)
chr3 (83-191)||(32024985-32025099)
chr3 (179-272)||(28830237-28830329)
chr3 (81-207)||(44085462-44085595)
chr3 (212-266)||(42937122-42937176)
chr3 (80-118)||(45244675-45244713)
chr3 (135-252)||(46622885-46623002)
chr3 (80-118)||(48304558-48304596)
chr3 (219-267)||(4394161-4394209)
chr3 (220-268)||(8735097-8735145)
chr3 (220-268)||(9087338-9087386)
chr3 (182-339)||(33701462-33701622)
chr3 (154-230)||(33438486-33438561)
chr3 (221-288)||(52777146-52777214)
[»] chr5 (44 HSPs)
chr5 (80-339)||(38640536-38640802)
chr5 (137-288)||(27212575-27212726)
chr5 (133-269)||(28083477-28083612)
chr5 (81-298)||(36359626-36359850)
chr5 (133-268)||(38692881-38693016)
chr5 (133-267)||(40620089-40620222)
chr5 (83-262)||(43388113-43388298)
chr5 (130-268)||(15799113-15799250)
chr5 (133-339)||(15957567-15957771)
chr5 (130-339)||(20891429-20891638)
chr5 (133-339)||(24203783-24203985)
chr5 (136-260)||(39524672-39524795)
chr5 (133-268)||(6156619-6156753)
chr5 (157-268)||(31929229-31929338)
chr5 (133-268)||(25746915-25747047)
chr5 (133-268)||(37183881-37184015)
chr5 (418-476)||(28594303-28594361)
chr5 (130-268)||(38871559-38871696)
chr5 (133-268)||(33487498-33487632)
chr5 (130-288)||(37095011-37095167)
chr5 (418-476)||(27786367-27786425)
chr5 (136-261)||(26190400-26190524)
chr5 (131-207)||(8032219-8032295)
chr5 (133-268)||(4064819-4064953)
chr5 (130-296)||(26318977-26319142)
chr5 (418-472)||(26795378-26795432)
chr5 (418-472)||(26806442-26806496)
chr5 (149-272)||(34529909-34530034)
chr5 (136-244)||(38372221-38372328)
chr5 (222-296)||(1350451-1350526)
chr5 (80-201)||(28445450-28445578)
chr5 (131-207)||(32842069-32842145)
chr5 (83-201)||(34440688-34440813)
chr5 (130-201)||(14111851-14111922)
chr5 (80-119)||(36359132-36359171)
chr5 (80-118)||(38641181-38641219)
chr5 (81-118)||(8739234-8739271)
chr5 (154-207)||(12465226-12465279)
chr5 (182-267)||(28108271-28108354)
chr5 (81-118)||(16429110-16429147)
chr5 (221-266)||(34440634-34440679)
chr5 (220-264)||(16428951-16428995)
chr5 (131-199)||(26095047-26095115)
chr5 (220-268)||(28445598-28445646)
[»] chr4 (37 HSPs)
chr4 (131-297)||(3703347-3703513)
chr4 (133-296)||(38536076-38536238)
chr4 (133-262)||(25491494-25491622)
chr4 (134-297)||(23523810-23523973)
chr4 (130-268)||(25752540-25752680)
chr4 (133-268)||(19835454-19835588)
chr4 (130-334)||(48319161-48319365)
chr4 (151-296)||(50392526-50392672)
chr4 (133-268)||(54631562-54631696)
chr4 (137-262)||(40703603-40703728)
chr4 (130-268)||(49396942-49397079)
chr4 (131-287)||(38416479-38416635)
chr4 (133-268)||(32441745-32441879)
chr4 (418-476)||(37370749-37370807)
chr4 (135-268)||(17933238-17933370)
chr4 (133-334)||(2506130-2506333)
chr4 (207-337)||(42660430-42660562)
chr4 (133-248)||(7931612-7931726)
chr4 (133-244)||(29822577-29822687)
chr4 (154-268)||(6228931-6229044)
chr4 (418-476)||(53594250-53594308)
chr4 (154-262)||(53894111-53894218)
chr4 (133-268)||(25539047-25539181)
chr4 (133-268)||(55052718-55052852)
chr4 (81-129)||(50392475-50392523)
chr4 (131-206)||(8106387-8106462)
chr4 (133-269)||(6003770-6003907)
chr4 (418-476)||(28100444-28100502)
chr4 (130-288)||(34972787-34972935)
chr4 (80-118)||(42660211-42660249)
chr4 (80-118)||(50391677-50391715)
chr4 (418-463)||(41762142-41762187)
chr4 (219-267)||(18051118-18051166)
chr4 (133-168)||(31582521-31582556)
chr4 (133-267)||(46440373-46440507)
chr4 (149-243)||(49002916-49003009)
chr4 (222-268)||(52076950-52076996)
[»] chr7 (26 HSPs)
chr7 (133-267)||(19225697-19225831)
chr7 (133-268)||(42925740-42925874)
chr7 (133-252)||(43737066-43737184)
chr7 (134-268)||(3936034-3936167)
chr7 (133-287)||(28230567-28230719)
chr7 (133-288)||(24042287-24042441)
chr7 (133-262)||(37518394-37518522)
chr7 (131-295)||(6467594-6467759)
chr7 (133-288)||(47202399-47202554)
chr7 (133-339)||(36468636-36468840)
chr7 (130-228)||(8154865-8154962)
chr7 (138-268)||(42877149-42877278)
chr7 (133-268)||(36408298-36408431)
chr7 (131-233)||(26555138-26555241)
chr7 (157-234)||(9151774-9151850)
chr7 (135-297)||(36629101-36629263)
chr7 (186-335)||(28349236-28349384)
chr7 (130-239)||(33574130-33574238)
chr7 (134-252)||(3304858-3304976)
chr7 (149-288)||(28346053-28346191)
chr7 (133-268)||(31642967-31643101)
chr7 (131-199)||(31985615-31985685)
chr7 (418-476)||(3634368-3634426)
chr7 (205-287)||(31985680-31985763)
chr7 (133-252)||(33151149-33151267)
chr7 (81-129)||(16278187-16278235)
[»] scaffold0508 (1 HSPs)
scaffold0508 (133-339)||(3494-3701)
[»] chr6 (14 HSPs)
chr6 (130-268)||(7412754-7412891)
chr6 (133-272)||(17264332-17264470)
chr6 (133-339)||(4508401-4508605)
chr6 (131-294)||(24604459-24604623)
chr6 (133-268)||(5699484-5699618)
chr6 (133-268)||(32035039-32035173)
chr6 (134-245)||(14587660-14587770)
chr6 (133-268)||(2813323-2813459)
chr6 (135-296)||(33413448-33413608)
chr6 (133-334)||(23406656-23406856)
chr6 (135-296)||(3717384-3717544)
chr6 (131-207)||(9905104-9905180)
chr6 (135-268)||(1945630-1945763)
chr6 (194-296)||(5638776-5638878)
[»] scaffold0027 (1 HSPs)
scaffold0027 (133-267)||(142062-142194)
[»] scaffold0137 (1 HSPs)
scaffold0137 (130-268)||(9593-9730)
[»] scaffold0182 (1 HSPs)
scaffold0182 (133-267)||(23050-23182)
[»] scaffold0010 (1 HSPs)
scaffold0010 (189-268)||(140534-140612)
[»] scaffold0287 (1 HSPs)
scaffold0287 (418-476)||(11659-11717)
[»] scaffold0016 (1 HSPs)
scaffold0016 (80-118)||(205642-205680)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 80 - 337
Target Start/End: Complemental strand, 25715479 - 25715219
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgtttat-ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttg 178  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||| |||| ||||| ||| |||||    
T  25715479 cggattacgtaatccggattgcatcagcaccatgaaaaaaatggtgtttgtgttcggattatgtaatccgaaaaaatcaggtaacgcgccctatcttttg 25715380  T
Q  179 agatttccggattacaaaatccggaaaaaa-tctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaacttt 276  Q
    ||||||  |||||||||| |||| |||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||     
T  25715379 agatttttggattacaaagtccgaaaaaaaatttgtaactcattttttcaccctttaacaaaggaaaacaccattccggattataaaatccggaaacttc 25715280  T
Q  277 aagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagtaaatc 337  Q
    ||||||||||||  ||||||| ||||  |  ||||||| |||| | |||||||| ||||||    
T  25715279 aagggcatttttgaaaaaaatagggcgcgttaggaaagacatagggtgggaaaaataaatc 25715219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 82 - 288
Target Start/End: Original strand, 9847462 - 9847674
Alignment:
Q  82 gattacgtaatccggattgcatcagcaccatgaaaaagatggtgttt--at----ttcggattatgtaatcagaaaaaatcatgtaatgcgccttatttt 175  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||  ||    |||||||||||||||  ||||||||||||||| |||||  |||||    
T  9847462 gattacgtaatccagattgcatcagcaccatgaaaaaaaaggtgtttggatggtgttcggattatgtaatacgaaaaaatcatgtaacgcgcccaatttt 9847561  T
Q  176 ttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaact 274  Q
    ||||||||| |||||||||||||| || ||||||| |||||| |||||||||| ||||||||||| ||||   |||| | |||||||||||||  |||||    
T  9847562 ttgagattttcggattacaaaatctgg-aaaaatcagtaactcattttttcactctttaacaaagaaaaatgccattccagattataaaatccggaaact 9847660  T
Q  275 ttaagggcattttt 288  Q
    | || |||||||||    
T  9847661 tcaaaggcattttt 9847674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 25217884 - 25218019
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| || || ||||||||||  |||||||||||||||||||| |||||||| || ||| ||||||||||||||    
T  25217884 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccg-aaaaaatccgttactcattttttcaccctt 25217982  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcca 269  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  25217983 taacaaaagaaaacatcattgcggattataaaatcca 25218019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 39447220 - 39447104
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||| |||||| || ||| ||||||||||||||||    
T  39447220 gattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccgga-aaaatccgttactcattttttcacccttta 39447122  T
Q  235 acaaaggaaaacatcatt 252  Q
    ||||| ||||||||||||    
T  39447121 acaaaagaaaacatcatt 39447104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 15995204 - 15995362
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttatttttt-gagatttccggattacaaaatccggaaaaaatctgtaacttattttttcac 228  Q
    ||||||||||||||||| | ||| |||||| || ||||| |||||||| ||  ||||| ||||||||||||||||||||  | || ||| ||||||||||    
T  15995204 tttcggattatgtaatccggaaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaaccc-gttactaattttttcac 15995302  T
Q  229 cctttaacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttt 288  Q
    ||||||||||| ||||||| |||| ||||||||||||||| |||  | ||||||||||||    
T  15995303 cctttaacaaaagaaaacaccattccggattataaaatccgaaaactaaagggcattttt 15995362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 33452537 - 33452671
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||| ||| | ||| ||||||||| ||||| ||||||||||  |||||| |||||||||||| |||||| || || ||| |||||| |||||||    
T  33452537 cggattatgtgatccggaaacatcatgtaacgcgccctattttttgaagtttccgaattacaaaatccagaaaaa-tccgttactcatttttccaccctt 33452635  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||||||||||||| |||||    
T  33452636 taacaaaagaaaacatcatttcggattatataatcc 33452671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 34517159 - 34517006
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| |||||| |||||||| ||||| |||||||||||||||   ||||||||||||| ||||||||  |||||| ||||||||||| | |    
T  34517159 ggattatgtaatccgaaaaa-tcatgtaacgcgccctattttttgagatttttcgattacaaaatcc-gaaaaaattcgtaactcattttttcaccgtat 34517062  T
Q  234 aacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    |||||||||||||| || |||||| ||| |||||| ||||||| || |||||||||    
T  34517061 aacaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaaggcattttt 34517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 36949039 - 36949172
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| ||||| ||||||||||  ||| | ||||||||||||||| ||||||| ||||||   |||||||||||     
T  36949039 cggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccgg-aaaaatccgtaactccatttttcacccta 36949137  T
Q  233 taacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||||||||||| |||| |||||||| |||||    
T  36949138 taacaaaggaaaacaccattccggattatgaaatc 36949172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 44465843 - 44465956
Alignment:
Q  154 atcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcattt 253  Q
    ||||||||| ||||| ||||||||||  ||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||| ||||||||||||     
T  44465843 atcatgtaacgcgccctattttttgaagtttccggattacaaaatccgg-aaaaatccgttactcattttttcaccctttaacaaaagaaaacatcattc 44465941  T
Q  254 cggattataaaatcc 268  Q
     |||||||| |||||    
T  44465942 tggattatataatcc 44465956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 288
Target Start/End: Complemental strand, 5507480 - 5507321
Alignment:
Q  131 ttcggattatgtaatcagaaaaaa--tcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcac 228  Q
    |||||||||| ||||| |||||||  |||||||| ||| ||||||||||||  |||  |||||||||||| || ||||||||||||||| ||||||||||    
T  5507480 ttcggattatataatccgaaaaaaaatcatgtaacgcgtcttattttttgaagtttttggattacaaaattcg-aaaaaatctgtaactcattttttcac 5507382  T
Q  229 cctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    | | |||||||||||||||  | |||||||||| ||| || ||||||| ||||||||||||    
T  5507381 catataacaaaggaaaacactagttcggattatgaaacccgaaaacttcaagggcattttt 5507321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 45153885 - 45154019
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  ||||| ||||||||||| | ||||||  | || ||| ||||||||||||||    
T  45153885 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaaccc-gttactcattttttcaccctt 45153983  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| ||||||||| |||||    
T  45153984 taacaaaagaaaacatcattccggattatataatcc 45154019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 17474893 - 17475007
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| |||||||| |  ||||||||||||||||||||| ||||||| || ||| ||||||||||| ||    
T  17474893 cggattatgtaatccggaaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccgg-aaaaatccgttactcattttttcaccttt 17474991  T
Q  233 taacaaaggaaaacat 248  Q
    ||||||| ||||||||    
T  17474992 taacaaaagaaaacat 17475007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 37981785 - 37981843
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37981785 aattaggatttctcacaacttataaaatgtccttaggtattcaaaaattgatagatttt 37981843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 32187963 - 32188098
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcaccct 231  Q
    |||||||||||||| | ||| |||||||||  |||| ||||||||||  ||||| ||||||||||||| | ||||| | || ||| | ||||||||||||    
T  32187963 cggattatgtaatccggaaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccag-aaaaacccgttactcatttttttcaccct 32188061  T
Q  232 ttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||| |||||||||||| ||||||||| |||||    
T  32188062 ttaacaaaagaaaacatcattccggattatacaatcc 32188098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 41510524 - 41510651
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcacccttt 233  Q
    ||||||||||||   ||| ||||||||| ||||| ||||||||||  |||||||||||| ||||| || ||||||| || ||| | ||||||||||||||    
T  41510524 gattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacgaaatctgg-aaaaatccgttactcatttttttcacccttt 41510622  T
Q  234 aacaaaggaaaacatcatttcggattata 262  Q
     ||||| ||||||| ||||||||||||||    
T  41510623 tacaaaagaaaacaccatttcggattata 41510651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 36875045 - 36874977
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    |||||||||||||| | ||| ||||||||| ||| | ||||||||||  ||||||||||||||||||||    
T  36875045 cggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccg 36874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 4268332 - 4268406
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||  ||||||||||||||| |||||    
T  4268332 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccgaaaaaa 4268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 25715679 - 25715641
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25715679 cggattacgtaatccggattgcatctgcaccatgaaaaa 25715641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 9847254 - 9847290
Alignment:
Q  82 gattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9847254 gattacgtaatccggattgcatcagcaccataaaaaa 9847290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 33366990 - 33366920
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    ||||||||||||||||| | ||| ||||||||| ||| |||| |||||||  ||| ||||||||||||||||    
T  33366990 tttcggattatgtaatccggaaatatcatgtaacgcgtctta-tttttgaagttttcggattacaaaatccg 33366920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 41855054 - 41855117
Alignment:
Q  205 aaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||| || ||| ||||||||||||||||||||  ||||||| |||| ||||||||| |||||    
T  41855054 aaaatccgttactcattttttcaccctttaacaacagaaaacaccattccggattatataatcc 41855117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 34519578 - 34519615
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  34519578 ggattacgtaatccggactacatcagcaccatgaaaaa 34519615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 41854993 - 41855061
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    ||||| |||||||| | ||| |||||||||  | || ||||||||||  ||||||||||||||||||||    
T  41854993 cggatcatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccggattacaaaatccg 41855061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 80 - 297
Target Start/End: Original strand, 43319236 - 43319459
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttatt 173  Q
    ||||||||||||||||||||||||||||||||||||||| |  |||||||      ||||||||||||||||| ||||||||||||||| ||||| ||||    
T  43319236 cggattacgtaatccggattgcatcagcaccatgaaaaaaagagtgtttagggggttttcggattatgtaatccgaaaaaatcatgtaacgcgccatatt 43319335  T
Q  174 ttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcca-aaa 272  Q
    |||| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||   || | |||||||||||||| |||    
T  43319336 tttttagatttccggattacaaaatccgg-aaaaatccgtaactcattttttcaccctttaacaaaggaaaacactgttccagattataaaatccagaaa 43319434  T
Q  273 ctttaagggcattttttgaaaaaat 297  Q
    ||| ||| |||||| | ||||||||    
T  43319435 cttcaagagcatttctagaaaaaat 43319459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 32817707 - 32817844
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| ||||||||||||||| ||||||||||  |||||||||||||||||| || ||||| | || ||| |||||||||||    
T  32817707 tttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctgg-aaaaacccgttactcattttttcacc 32817805  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||| |||||||||||| ||||||||| |||||    
T  32817806 ctttaacaaaagaaaacatcattccggattatataatcc 32817844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 18583643 - 18583798
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| ||||| |||||||| |  ||||| ||||||||||||||| |||| || |||||||  |||||||||||     
T  18583643 cggattatgtaatccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccgg-aaaagtccgtaacttcatttttcacccta 18583741  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    ||||||||||||||| |||| |||||||| |||||| ||||| | ||||||||||||    
T  18583742 taacaaaggaaaacaccattccggattatgaaatccgaaaacctcaagggcattttt 18583798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 297
Target Start/End: Complemental strand, 27794899 - 27794751
Alignment:
Q  148 gaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaaca 247  Q
    ||||||||||||||| ||||| ||||||| ||||||| |||||||||||||| | ||||||||  ||||| ||||||||||||| |||||||||||||||    
T  27794899 gaaaaaatcatgtaaagcgccctattttt-gagattttcggattacaaaatctg-aaaaaatccataactcattttttcaccctataacaaaggaaaaca 27794802  T
Q  248 tcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaat 297  Q
     || |||||||||| |||||| |||| || ||||||||||||  |||||||    
T  27794801 ccagttcggattatgaaatccgaaaatttcaagggcatttttgaaaaaaat 27794751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 44573195 - 44573299
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| ||||| ||||||||||  ||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  44573195 cggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatcc-gaaaaaatctgttactcattttttcaccctt 44573293  T
Q  233 taacaa 238  Q
    ||||||    
T  44573294 taacaa 44573299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 267
Target Start/End: Original strand, 40908030 - 40908166
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| ||||| ||||||||   ||||  |||||||||  |||||||||| |||||| |  |||||||| || ||| |||||||||||    
T  40908030 tttcggattatgtaatccgaaaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattct-aaaaaatccgttactcattttttcacc 40908128  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  40908129 ctttaacaaaagaaaacaccatttcggattataaaatc 40908166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 34162820 - 34162955
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||| |||  |||| ||||||||||  ||||||||||||||||||||||||||| | | ||||   |||||||||||     
T  34162820 cggattatgtaatccggaaacatcatctaacacgccctattttttgaagtttccggattacaaaatccggaaaaaacccgcaactccatttttcacccta 34162919  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  34162920 taacaaaggaaaacaccattccggattatgaaatcc 34162955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 6223834 - 6223971
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttatttttt-gagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||| ||  ||| ||||||  ||||| || |||||||| |||||| |||||||||||    
T  6223834 ttcggattatgtaatccaaaaaaatcatgtaatgcgctctatttttttgaagttttcggattgaaaaattcg-aaaaaatccgtaactcattttttcacc 6223932  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    || |||||||||||||||  | |||||||||| ||||||    
T  6223933 ctataacaaaggaaaacacgagttcggattatgaaatcc 6223971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 288
Target Start/End: Original strand, 33611511 - 33611664
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||  |||||||||||| ||||||||| ||||||   ||||||||||| ||    
T  33611511 gattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccaaattacaaaatcc-gaaaaaatccgtaactccatttttcaccctata 33611609  T
Q  235 acaaaggaaaacatcatttcggattataaaatcca-aaactttaagggcattttt 288  Q
    |||||| |||||| ||||  ||||||| ||||||| |||| | ||||||||||||    
T  33611610 acaaagaaaaacaccattctggattatgaaatccagaaacctcaagggcattttt 33611664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 15069941 - 15070069
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||| ||||| | ||| |||||||||  || | ||||||||||  |||||||||||||||||||| |||| ||| || ||| |||| ||| |||||    
T  15069941 cggattatataatccggaaacatcatgtaacacgtcctattttttgaagtttccggattacaaaatccg-aaaatatccgttactcatttgttctccctt 15070039  T
Q  233 taacaaaggaaaacatcatttcggattata 262  Q
    ||||||| ||||||||||||||||||||||    
T  15070040 taacaaaagaaaacatcatttcggattata 15070069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 41584769 - 41584903
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| |||||||||   ||| || ||||||| |||||||||||||||||||| | ||||| | |||||||  |||||||||||     
T  41584769 cggattatgtaatccgaaaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccag-aaaaacccgtaacttcatttttcacccta 41584867  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| ||||||| |||| | |||||| ||||||    
T  41584868 taacaaaagaaaacaccattcctgattatgaaatcc 41584903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 288
Target Start/End: Complemental strand, 23442795 - 23442643
Alignment:
Q  136 attatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaa 235  Q
    ||||| ||||| | ||| ||||||||| ||||| ||||||||||  ||||| ||||| |||||||||| |||||| ||||||   ||||||||| | |||    
T  23442795 attatataatccggaaacatcatgtaacgcgccctattttttgaagtttccagattataaaatccgga-aaaatccgtaactccatttttcaccttataa 23442697  T
Q  236 caaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    ||||||||||||||||| ||||| || ||||||  |||| | ||||||||||||    
T  23442696 caaaggaaaacatcattccggataatgaaatccggaaacctcaagggcattttt 23442643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 30829562 - 30829709
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| ||||| ||||||||| ||||| |||||||  || ||||||||||||||||||||           ||||||  |||||||||    
T  30829562 tttcggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaatccg-----------taacttcatttttcacc 30829649  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    || ||||||||||||||| |||| |||||||| ||||||  |||||| ||||||||||||    
T  30829650 ctataacaaaggaaaacaccattccggattatgaaatccggaaacttcaagggcattttt 30829709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 133 - 296
Target Start/End: Complemental strand, 17000438 - 17000277
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    ||||||||||||||   ||| ||||| ||| | ||| |||| |||||  |||||| |||||||||||||||||||  | ||||||   |||||||||||     
T  17000438 cggattatgtaatccagaaacatcatctaacgtgccctattatttgatgtttccgaattacaaaatccggaaaaa--ccgtaactccatttttcacccta 17000341  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaa 296  Q
    ||||||||||||||| ||||  ||||||| |||||| |||  | |||||||||||| |||||||    
T  17000340 taacaaaggaaaacaccattctggattatgaaatccgaaaactcaagggcatttttggaaaaaa 17000277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 268
Target Start/End: Complemental strand, 38950387 - 38950207
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattt 174  Q
    ||||||||||||||| ||||||||| |||||||||||| |  |||||||      ||||||||||||||||| ||||||||||||||| ||||| |||||    
T  38950387 ggattacgtaatccgaattgcatcaacaccatgaaaaaaagagtgtttagggagttttcggattatgtaatctgaaaaaatcatgtaacgcgccctattt 38950288  T
Q  175 tttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||          ||||||||||||| || ||||||| |||||| | ||||||| | ||||||||||||||| | |||| || ||||||||||||    
T  38950287 tt----------ggattacaaaatctgg-aaaaatccgtaactca-tttttca-cttttaacaaaggaaaataccattccgaattataaaatcc 38950207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 45567972 - 45568110
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttatttt-ttcac 228  Q
    |||||||| ||||||||  |||| ||||||||  ||||| ||||||||||  |||||| |||||||||| ||||||||  | || ||| ||||| |||||    
T  45567972 tttcggatcatgtaatccaaaaatatcatgtagcgcgccctattttttgaagtttccgaattacaaaattcggaaaaaccc-gttactcatttttttcac 45568070  T
Q  229 cctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||| ||||| |||||| ||||||||| |||||    
T  45568071 cctttaacaaaagaaaatatcattccggattatataatcc 45568110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 40650774 - 40650903
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcaccct 231  Q
    ||||||||||||||   ||| |||||||||  |||| ||||||||||  ||||||||||||||| ||| ||||||||| || ||| | ||||||||| ||    
T  40650774 cggattatgtaatccagaaacatcatgtaacacgccctattttttgaagtttccggattacaaattcc-gaaaaaatccgttactcatttttttcacgct 40650872  T
Q  232 ttaacaaaggaaaacatcatttcggattata 262  Q
    |||||||| ||||||| |||| |||||||||    
T  40650873 ttaacaaaagaaaacaccattccggattata 40650903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 42546030 - 42545895
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||| |||| ||| | ||| ||||||||| ||| | ||||||||||  |||||||||||||||||||||| |||||| || | ||  |||||||||    
T  42546030 tttcggatcatgttatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgga-aaaatccgtta-ttcatttttcacc 42545933  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    |||||||||| || |||| |||| ||||||||| ||||    
T  42545932 ctttaacaaaagataacaccattccggattatataatc 42545895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 38885229 - 38885165
Alignment:
Q  204 aaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||| ||||||||| |||||    
T  38885229 aaaaatctgttactcattttttcaccctttaacaaaagaaaacaccattccggattatataatcc 38885165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 800899 - 800969
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    |||||||| | ||||| ||||||||||  ||| ||||| ||||||||||||||| ||||||||||||||||    
T  800899 ttcggattctataatccgaaaaaatcaaataaagcgccctattttttgagattttcggattacaaaatccg 800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 7011249 - 7011156
Alignment:
Q  154 atcatgtaatgcgcc-ttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaaca 247  Q
    ||||||||| ||||| || ||||||||  ||||||||||||||||||| ||||||||| || ||| | ||||||||||||||||||  |||||||    
T  7011249 atcatgtaacgcgccctttttttttgaagtttccggattacaaaatccagaaaaaatccgttactca-tttttcaccctttaacaatagaaaaca 7011156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 28866732 - 28866803
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||| | ||||||||||||  ||||| |||||||| | | |||||||||||||||||||||||||    
T  28866732 gattatgtaatccggaaaaatcatgtagcgcgccctatttttt-atagttccggattacaaaatccggaaaaa 28866803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 43319027 - 43319063
Alignment:
Q  82 gattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||||||||||||||||||||||||    
T  43319027 gattacgtaatccggattgcatcagcaccatgaaaaa 43319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 49677542 - 49677419
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| | ||| ||||||||| ||||| ||||||||||  ||||| ||||||||||| ||           | ||| |||||||||||||||    
T  49677542 ggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcg-----------ttactcattttttcacccttt 49677454  T
Q  234 aacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||| ||||||| |||| ||||||||| |||||    
T  49677453 aacaaaagaaaacaccattccggattatataatcc 49677419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 52744931 - 52745034
Alignment:
Q  148 gaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaaca 247  Q
    ||||| ||||||||  ||||| ||||||||||  ||| | ||||||||||| ||| ||||||| || ||| |||||||||| |||||||||| ||||| |    
T  52744931 gaaaatatcatgtagcgcgccctattttttgaagttttcagattacaaaattcgg-aaaaatccgttactcattttttcacactttaacaaaagaaaata 52745029  T
Q  248 tcatt 252  Q
    |||||    
T  52745030 tcatt 52745034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 418 - 465
Target Start/End: Original strand, 42657879 - 42657926
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaat 465  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||||    
T  42657879 aattaggatttttcacaacttataaaatgtccattggtattcaaaaat 42657926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 49786329 - 49786195
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||| | |||||||| |  ||| |||||| ||||||||||| ||||||  |||||   |||||||||||     
T  49786329 cggattatgtaatccggaaacatcatgtaacgcgtcctattttttaaagttttcggattgcaaaatccgga-aaaatccataactccatttttcacccta 49786231  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||| |||||||||||  ||| | |||||| ||||||    
T  49786230 taataaaggaaaacacaattccagattatgaaatcc 49786195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 34006316 - 34006246
Alignment:
Q  136 attatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaa 206  Q
    ||||||||||| | ||||||||||||   |||| ||||||||||  ||||||||||| |||||||||||||    
T  34006316 attatgtaatccggaaaaatcatgtagcccgccctattttttgaattttccggattaaaaaatccggaaaa 34006246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 38950869 - 38950832
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  38950869 ggattacgtaatccgaattgcatcagcaccatgaaaaa 38950832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 24471411 - 24471481
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    ||||||||||||||||| | ||| ||||||||| ||||| || |||||||  |||| |||||||||||||||    
T  24471411 tttcggattatgtaatccggaaacatcatgtaacgcgcccta-tttttgaagtttctggattacaaaatccg 24471481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 32542455 - 32542388
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    ||||||||||||| | ||| ||||||||| || || ||||||||||   |||||||||||||||||||    
T  32542455 ggattatgtaatccgtaaacatcatgtaacgcaccctattttttgaagattccggattacaaaatccg 32542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 45046950 - 45047023
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||||  | ||| ||||||||||| ||| | ||||||||  ||| ||||||||||||||||||||||    
T  45046950 cggattatgtaattcggaaacatcatgtaatg-gccctcttttttgaagttttcggattacaaaatccggaaaaa 45047023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 9446184 - 9446221
Alignment:
Q  164 gcgccttattttttgagatttccggattacaaaatccg 201  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  9446184 gcgccctattttttgagattttcggattacaaaatccg 9446221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 24471490 - 24471566
Alignment:
Q  221 tttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaa 296  Q
    |||| |||||| ||||||||||||||| |||| |||||||| ||||||  |||| | |||| ||||||| |||||||    
T  24471490 ttttgcaccctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaaggacatttttggaaaaaa 24471566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 80 - 288
Target Start/End: Complemental strand, 41530789 - 41530574
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgtttat------ttcggattatgtaatcagaaaaaa-tcatgtaatgcgccttat 172  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||| ||||       ||| |||||||||||| ||||||| |||||||| ||||| |||    
T  41530789 cggattacgtaatccggattgcaacagcaccatgaaaaaaagggtttttagggggtgttcagattatgtaatctgaaaaaaatcatgtaacgcgccctat 41530690  T
Q  173 tttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcca-aa 271  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||    
T  41530689 tttttgagatttccggattacaaaattcggaaaaa-tccgtaactcatttttccaccctttaacaaaggaaaacatcattccggattataaaatccagaa 41530591  T
Q  272 actttaagggcattttt 288  Q
    |||| ||||||||||||    
T  41530590 acttcaagggcattttt 41530574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 92 - 334
Target Start/End: Original strand, 36404208 - 36404453
Alignment:
Q  92 tccggattgcatcagcaccatgaaaaagatggtgttta-----tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttcc 186  Q
    ||||||||||||||||||||||||||| | ||||||||     ||||||||||| ||||| |||||| ||||||||  |||| ||||||||||||||| |    
T  36404208 tccggattgcatcagcaccatgaaaaaaagggtgtttaggagttttcggattatataatccgaaaaa-tcatgtaacacgccctattttttgagattttc 36404306  T
Q  187 ggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattt 286  Q
    |||||||||||||||||| || || |||||| ||||||||||||||||||||||| ||||  |||| |||||||||||||||  ||||| ||| ||||||    
T  36404307 ggattacaaaatccggaataa-tccgtaactcattttttcaccctttaacaaagggaaactccattccggattataaaatccggaacttcaagagcattt 36404405  T
Q  287 tttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagtaa 334  Q
    ||||||||||| ||||  ||||||||| | ||| | ||||||||||||    
T  36404406 tttgaaaaaatagggcgcgcgaggaaaactatagggtgggaaaagtaa 36404453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 8885552 - 8885686
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  ||||||||||||||||||||| ||||| | || ||| |||||||||| |||    
T  8885552 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgg-aaaaacccgttactcattttttcactctt 8885650  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| ||||||||| |||||    
T  8885651 taacaaaagaaaacatcattccggattatataatcc 8885686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 27928042 - 27928156
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| | ||| ||||||||| ||||| ||||||||||  ||||||||||||||||||||| ||||||| || ||| ||||||||||||||||    
T  27928042 gattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgg-aaaaatccgttactcattttttcacccttta 27928140  T
Q  235 acaaaggaaaacatca 250  Q
    ||||| ||||||||||    
T  27928141 acaaaagaaaacatca 27928156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 44106283 - 44106149
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||| || ||||||| || ||| ||||||||||||||    
T  44106283 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctgg-aaaaatccgttactcattttttcaccctt 44106185  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| ||||||| ||||   |||||||||||||    
T  44106184 taacaaaagaaaacaccattctagattataaaatcc 44106149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 3094741 - 3094609
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||||||||| ||||||||||  |||||||||||||||||||||| |||| | ||||||   |||||||||||     
T  3094741 cggattatgtaatccggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccgga-aaaacccgtaactccatttttcacccta 3094643  T
Q  233 taacaaaggaaaacatcatttcggattataaaat 266  Q
    ||||||||||||||| |||| || ||||| ||||    
T  3094642 taacaaaggaaaacaccattccgaattattaaat 3094609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 21004452 - 21004317
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| || |||||| |||||||||||||| |  |||||||||||||||||||||| |||||| ||||||   |||||||||    
T  21004452 tttcggattatgtaatccggaaacat-atgtaacgcgccttattttttaaagtttccggattacaaaatccgga-aaaatccgtaactccatttttcacc 21004355  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    || ||||||||||||||| |||| |||||||| |||||    
T  21004354 ctataacaaaggaaaacaccattccggattatgaaatc 21004317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 24318080 - 24318138
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24318080 aattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagatttt 24318138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 246
Target Start/End: Original strand, 7971037 - 7971208
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgtttat------ttcggattatgtaat-cagaaaaaatcatgtaatgcgccttat 172  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||      || |||||||||||| ||||||| |||| |||  ||| | ||     
T  7971037 cggattacgtaatccggattgcatcagcaccatggaaaaaagggtgtttatggggtgtttggattatgtaatccagaaaacatcacgtagcgcgtccta- 7971135  T
Q  173 tttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaac 246  Q
    |||||||  ||||| ||||||||||||||| ||||||| ||||||   ||||||||||| |||| |||||||||    
T  7971136 tttttgaagtttccagattacaaaatccgg-aaaaatccgtaactccgtttttcaccctataacgaaggaaaac 7971208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 9073563 - 9073430
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| | ||| ||||||||| |   ||||||||||||  |||||||||||  ||||||| ||||| || || ||| ||||||| |||||||    
T  9073563 ggattatgtaatccggaaacatcatgtaacgaatcttattttttgaagtttccggattaacaaatccg-aaaaagtccgttactcattttttaacccttt 9073465  T
Q  234 aacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||| ||||||||||||||| |||||| |||||    
T  9073464 aacaaaagaaaacatcatttcgaattatataatcc 9073430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 31519991 - 31520116
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||  ||||||||||  |||| |||||||||||||||| ||||| | ||||||   |||||||||||     
T  31519991 cggattatgtaatccggaaacatcatgtaacgcgctctattttttgaagtttctggattacaaaatccgg-aaaaagccgtaactccatttttcacccta 31520089  T
Q  233 taacaaaggaaaacatcatttcggatt 259  Q
    ||||||||||||||| |||| ||||||    
T  31520090 taacaaaggaaaacaccattccggatt 31520116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 267
Target Start/End: Complemental strand, 16310658 - 16310526
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||| ||||||| | ||||||||| ||| || || ||||||||||  |||||||||||||||||||||| |||| ||||||||   ||||||||||  |    
T  16310658 ggattgtgtaatccggaaaaatcatctaacgcaccctattttttgaagtttccggattacaaaatccgga-aaaacctgtaactccatttttcaccccat 16310560  T
Q  234 aacaaaggaaaacatcatttcggattataaaatc 267  Q
    |||||||||||||| ||||  ||||||| |||||    
T  16310559 aacaaaggaaaacaccattctggattatgaaatc 16310526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 28916839 - 28916719
Alignment:
Q  137 ttatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaac 236  Q
    ||||||||||   ||| ||||| ||| ||||| ||||||||||  ||||||||||||||||||||||||||  | || ||  ||||||||||||||||||    
T  28916839 ttatgtaatccagaaacatcatttaacgcgccctattttttgaagtttccggattacaaaatccggaaaaaccc-gttacccattttttcaccctttaac 28916741  T
Q  237 aaaggaaaacatcatttcggat 258  Q
    ||| |||||||||||| |||||    
T  28916740 aaaagaaaacatcattccggat 28916719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 42280990 - 42281121
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatg---taatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||||||||| | ||| ||||||   ||| ||||  ||||||||||  ||| |||||||| ||||||||||||| || || ||| |||||||||||    
T  42280990 cggattatgtaatctggaaacatcatgatgtaacgcgctctattttttgaagttttcggattacgaaatccggaaaaa-tccgttactcattttttcacc 42281088  T
Q  230 ctttaacaaaggaaaacatcatttcggattata 262  Q
    ||||||||||  ||||||||||| |||||||||    
T  42281089 ctttaacaaaaaaaaacatcattccggattata 42281121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 35676635 - 35676711
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||||||| | ||||||||| ||  ||||| |||||||||   ||||||||||||||||||||||||||    
T  35676635 ttcggattatgtaatccggaaaaatcatatagcgcgccctattttttgtagtttccggattacaaaatccggaaaaa 35676711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 24627712 - 24627650
Alignment:
Q  49 ttcagaataggtgctggtgttgtccggattacggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  24627712 ttcagaattggtgctggtgttgtccggattacg-------taatccggattgcatcagcaccatgaaaaa 24627650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 252
Target Start/End: Complemental strand, 37248617 - 37248500
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| | ||| ||||| ||| ||||| |||||||| |  ||| ||||||||||||||| | ||||| | ||||||   ||||||||||| |    
T  37248617 ggattatgtaatccggaaacatcatctaacgcgccctatttttttaagttttcggattacaaaatccag-aaaaacccgtaactccatttttcaccctat 37248519  T
Q  234 aacaaaggaaaacatcatt 252  Q
    |||||||||||||| ||||    
T  37248518 aacaaaggaaaacaccatt 37248500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 40994792 - 40994745
Alignment:
Q  221 tttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  40994792 tttttcaccctttaacaaaagaaaacatcattccggattatataatcc 40994745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 11698385 - 11698451
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatc 199  Q
    |||||||||||||| | ||| |||||||||  || ||||||||||||  ||||||||||||||||||    
T  11698385 cggattatgtaatccggaaacatcatgtaacacgtcttattttttgaagtttccggattacaaaatc 11698451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 34853382 - 34853262
Alignment:
Q  140 tgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaa 239  Q
    ||||||| | ||| ||||||||| ||||| |||||||| |  ||| ||||||||||||||||||||||  | ||| || ||||| | |||||||||||||    
T  34853382 tgtaatccggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaaccc-gta-ctcattttcttaccctttaacaaa 34853285  T
Q  240 ggaaaacatcatttcggattata 262  Q
      ||||||||||| || ||||||    
T  34853284 ataaaacatcattccgaattata 34853262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 41530999 - 41530963
Alignment:
Q  82 gattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||||||||| ||||||||||||||    
T  41530999 gattacgtaatccggattgcattagcaccatgaaaaa 41530963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 31234774 - 31234883
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttatt 173  Q
    |||||||||||||||| | |||||||| ||||||||||| ||||||||||       |||||||| | ||||| |||||||| || ||  ||||| ||||    
T  31234774 cggattacgtaatccgaactgcatcagtaccatgaaaaa-atggtgtttaggggttgttcggattctataatccgaaaaaattatatagcgcgccctatt 31234872  T
Q  174 ttttgagattt 184  Q
    |||||||||||    
T  31234873 ttttgagattt 31234883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 17120077 - 17120125
Alignment:
Q  221 tttttcaccctttaacaaaggaaaacatcatttcggattataaaatcca 269  Q
    ||||||||||| |||||||||||||  | | ||||||||||||||||||    
T  17120077 tttttcaccctataacaaaggaaaaactgaattcggattataaaatcca 17120125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 28219201 - 28219249
Alignment:
Q  220 ttttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||||  |||||||||||||  ||| |||||||||||||||||    
T  28219201 ttttttcaccccataacaaaggaaaaactcaattcggattataaaatcc 28219249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 48304109 - 48303918
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattt 174  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||| |      ||||||||||||||||| |||||||||||||||  | || |||||    
T  48304109 ggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattatgtaatctgaaaaaatcatgtaacacaccctattt 48304010  T
Q  175 tttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||    
T  48304009 tttgagatttccggattacaaaatccgga-aaaatccgtaactcattttttcaccctttaacaaaggaaaacaccattccggattatgaaatc 48303918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 80 - 339
Target Start/End: Complemental strand, 45244504 - 45244243
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta--tttcggattatgtaatcagaaaaaatcatgtaatgcgccttatttttt 177  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||   |||| |||||||||||| ||||||||||||||| ||||| ||||||||    
T  45244504 cggattacgtaatccagattgcatcagcaccatgaaaaaaagggtgtttggttttcagattatgtaatccgaaaaaatcatgtaacgcgccctatttttt 45244405  T
Q  178 gagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaacttt 276  Q
    ||||||| || ||||||||||||||| ||||||  ||||| ||||||||| | |||||||||||||||||  ||| |||||||| || ||| |||||||     
T  45244404 gagattttcgaattacaaaatccgga-aaaatccataactcattttttcatcttttaacaaaggaaaacacaattccggattattaattccgaaaacttc 45244306  T
Q  277 aagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagtaaatccc 339  Q
    ||||  ||||||  ||||||| ||||  ||||| ||| ||||| | ||| |||||||||||||    
T  45244305 aaggatatttttgaaaaaaatagggcgcgcgagaaaaaccatagggtggaaaaagtaaatccc 45244243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 288
Target Start/End: Complemental strand, 51258464 - 51258308
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccc 230  Q
    |||||||||||||||| |||||||| |||||| ||||| |||||||||| ||||  ||||||||||||||||| |||||| |||||| | ||||||||||    
T  51258464 ttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaatccgga-aaaatccgtaactca-tttttcaccc 51258367  T
Q  231 tttaacaaaggaaaacatcatttcggattataaaatcca-aaactttaagggcattttt 288  Q
    |||||||||||||||||  ||| |||||||| ||||||| |||||| |||| |||||||    
T  51258366 tttaacaaaggaaaacacaattccggattatgaaatccagaaacttcaaggacattttt 51258308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 47740031 - 47740165
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||| || ||||||||||  || ||||||||||||||    
T  47740031 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctgg-aaaaatctgttgctcattttttcaccctt 47740129  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| ||||||||| |||||    
T  47740130 taacaaaagaaaacatcattccggattatataatcc 47740165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 49096327 - 49096457
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||  |||||||||||||||   ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  49096327 ggattatgtaattcgaaaaaatcatgtaacatgccatattttttgagatttccggattacaaaatccgg-aaaaatccgtaactta-tttttcacccttt 49096424  T
Q  234 aacaaaggaaaacatcatttcggattataaaat 266  Q
    || |||| ||||||||||| | |||||| ||||    
T  49096425 aataaagaaaaacatcattccagattatgaaat 49096457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 47302082 - 47301924
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| ||||||||| |||||||||||||| |  |||||||||||||||||||||| ||||||  |||||   |||||||||    
T  47302082 tttcggattatgtaatccggaaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccgga-aaaatccataactccatttttcacc 47301984  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    || ||||||||||||||| |||| || ||||| |||||| ||||||| |||| |||||||    
T  47301983 ctataacaaaggaaaacaccattccgaattatgaaatccgaaaacttcaaggacattttt 47301924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 38977844 - 38977981
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||||||||||||  |||| | ||||||| ||||| ||||||||||  ||||||||||||||||||  | ||||||| || |||||||||||||||    
T  38977844 tttcggattatgtaatcccaaaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctag-aaaaatccgttacttattttttcacc 38977942  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||  |||||| |||| | ||||||| |||||    
T  38977943 ctttaacaaaataaaacaccattccagattatataatcc 38977981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 51540713 - 51540848
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttatttt--ttcaccc 230  Q
    |||||||||||||  | ||| ||||||||| ||||| ||||||||||  |||||||||| |||||||| |||||| || || ||| |||||  |||||||    
T  51540713 cggattatgtaattcggaaacatcatgtaacgcgccctattttttgaagtttccggattccaaaatccagaaaaa-tccgttactcattttttttcaccc 51540811  T
Q  231 tttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  51540812 tttaacaaaagaaaacaccatttcggattataaaatc 51540848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 3937451 - 3937293
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||| |||||||||||   ||| ||||||||| ||||| ||||||||||  ||||||||||||||||| |||||||| || ||||||   ||||||| |    
T  3937451 tttcgaattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaattcggaaaaactc-gtaactccatttttcatc 3937353  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    || ||||||||||||||| ||||  ||||||||||||||  |||| | ||||||||||||    
T  3937352 ctataacaaaggaaaacaccattctggattataaaatccggaaacctcaagggcattttt 3937293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 10215961 - 10215904
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagattt 475  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10215961 aattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagattt 10215904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 10225590 - 10225533
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagattt 475  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10225590 aattaggatttctcacaacttataaaatgtccttgggtattcaaaaattgatagattt 10225533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 34821516 - 34821628
Alignment:
Q  154 atcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcattt 253  Q
    |||| |||| ||||| ||||||||||  ||||||||||||||||||||| |||| || || ||| ||||||||||||||||||||| ||||||| ||||     
T  34821516 atcaggtaacgcgccctattttttgaagtttccggattacaaaatccgg-aaaattccgttactcattttttcaccctttaacaaaagaaaacaccattc 34821614  T
Q  254 cggattataaaatc 267  Q
    ||||||||| ||||    
T  34821615 cggattatataatc 34821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 3902905 - 3903039
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    ||||||||||||||  |||| ||||||||| ||||  ||||||||||  ||| ||||||||||||||||||||||  | ||||||    ||||||||||     
T  3902905 cggattatgtaatccaaaaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatccggaaaaac-cagtaactccacttttcacccta 3903003  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  3903004 taacaaaggaaaacaccattccggattatgaaatcc 3903039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 3352168 - 3352329
Alignment:
Q  136 attatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttatttt-ttcacccttta 234  Q
    ||||||||||| | ||| ||||||||| || || |||||||| |  ||||| |||||||||||  ||||||| || || ||| ||||| |||||||||||    
T  3352168 attatgtaatccggaaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattc-gttactcatttttttcacccttta 3352266  T
Q  235 acaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaat 297  Q
    |||||  |||||||||||| |||||||||||||| ||| || || |||||||||  |||||||    
T  3352267 acaaaaaaaaacatcattttggattataaaatccgaaaattcaaaggcatttttgaaaaaaat 3352329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 28873062 - 28872929
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| | ||| || |||||| ||| | |||||||||| |||| ||||||| ||||||| |||||| || |||||||  ||||||||||| |    
T  28873062 ggattatgtaatccggaaacataatgtaacgcgtcctattttttgaaattttcggattataaaatccagaaaaactc-gtaacttcatttttcaccctat 28872964  T
Q  234 aacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| ||||||||||| | |||||| ||||||    
T  28872963 aacaaagaaaaacatcattccagattatgaaatcc 28872929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 45926865 - 45926807
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  45926865 aattaggatttctcacaacttataaaatctcattcggtattcaaaaattgatagatttt 45926807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 35142134 - 35142003
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| || |||||||  |||||||||||||||| ||||||||| || || ||||   |||||||||||    
T  35142134 cggattatgtaatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaa-tccgttactt---ttttcaccctt 35142039  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| || |||| |||| ||||||||| |||||    
T  35142038 taacaaaagataacaccattccggattatataatcc 35142003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 47123137 - 47123033
Alignment:
Q  162 atgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattat 261  Q
    ||||||| ||||||||||  ||||||||||||||||| ||||||||  | || ||| ||||||||||||||||||||| |||||||||||| | ||||||    
T  47123137 atgcgccctattttttgaagtttccggattacaaaattcggaaaaaccc-gttactcattttttcaccctttaacaaaagaaaacatcattccagattat 47123039  T
Q  262 aaaatc 267  Q
    | ||||    
T  47123038 ataatc 47123033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 47130503 - 47130399
Alignment:
Q  162 atgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattat 261  Q
    ||||||| ||||||||||  ||||||||||||||||| ||||||||  | || ||| ||||||||||||||||||||| |||||||||||| | ||||||    
T  47130503 atgcgccctattttttgaagtttccggattacaaaattcggaaaaaccc-gttactcattttttcaccctttaacaaaagaaaacatcattccagattat 47130405  T
Q  262 aaaatc 267  Q
    | ||||    
T  47130404 ataatc 47130399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 50716312 - 50716180
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |||||||||  |||| ||||||||||  ||| ||||||||||||||| ||||||| | ||||||   |||||||||||     
T  50716312 cggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatcc-gaaaaaacccgtaactccatttttcacccta 50716214  T
Q  233 taacaaaggaaaacatcatttcggattataaaat 266  Q
    ||||||||||||| | |||| |||||||| ||||    
T  50716213 taacaaaggaaaataccattccggattatgaaat 50716180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 50796535 - 50796667
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |||||||||  |||| ||||||||||  ||| ||||||||||||||| ||||||| | ||||||   |||||||||||     
T  50796535 cggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatcc-gaaaaaacccgtaactccatttttcacccta 50796633  T
Q  233 taacaaaggaaaacatcatttcggattataaaat 266  Q
    ||||||||||||| | |||| |||||||| ||||    
T  50796634 taacaaaggaaaataccattccggattatgaaat 50796667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 10104813 - 10104759
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgataga 472  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  10104813 aattaggatttctcacaacttataaaatgtctttgggtattcaaaaattgataga 10104759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 39149869 - 39149757
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |  |||||| ||||| ||||||||||| |||| ||||||||||||||||||||| || ||  || ||||||||||||||    
T  39149869 cggattatgtaatccggaaacactatgtaacgcgccctattttttgag-tttctggattacaaaatccggaaaaa-tccgttgctaattttttcaccctt 39149772  T
Q  233 taacaaaggaaaaca 247  Q
    ||||||| |||||||    
T  39149771 taacaaaagaaaaca 39149757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 2358721 - 2358856
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttatttttt-gagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccct 231  Q
    |||||||||||| | | ||| |||||||||  |||| |||||||| ||  ||||||||||||||||||| | |||| || ||||||   |||||||||||    
T  2358721 cggattatgtaagccggaaacatcatgtaacacgccctatttttttgaagtttccggattacaaaatccaggaaaa-tccgtaactccatttttcaccct 2358819  T
Q  232 ttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
     ||||||||||||||| |||| |||||||| ||||||    
T  2358820 ataacaaaggaaaacaccattccggattatgaaatcc 2358856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 335
Target Start/End: Complemental strand, 42936659 - 42936527
Alignment:
Q  204 aaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaatggggc 302  Q
    ||||||| ||||||  |||||||||||||||||||||||||||| |||| |||||||| ||||||  |||||| ||||| |||||  |  ||||| || |    
T  42936659 aaaaatccgtaactccttttttcaccctttaacaaaggaaaacaccattccggattatgaaatccggaaacttcaagggtattttgggggaaaataggac 42936560  T
Q  303 atgcgaggaaagccataagatgggaaaagtaaa 335  Q
     ||||||||||| |||| | | |||||||||||    
T  42936559 gtgcgaggaaagacatagggttggaaaagtaaa 42936527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 30721903 - 30722043
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaa---tgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttc 226  Q
    |||||||||||||||| |||||||||||||||   |||||| ||||||||||  ||| ||||||||||||| |  |||| |||  ||||| | |||||||    
T  30721903 ttcggattatgtaatccgaaaaaatcatgtaatattgcgccctattttttgaagttttcggattacaaaat-ctaaaaacatccataactcatttttttc 30722001  T
Q  227 accctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    || || ||||||||||||||| || ||| |||||| ||||||    
T  30722002 actctataacaaaggaaaacaccagttcagattatgaaatcc 30722043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 33700731 - 33700662
Alignment:
Q  220 ttttttcaccctttaacaaaggaaaacatcatttcggattataaaatcca-aaactttaagggcattttt 288  Q
    |||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||| |||| |||||||    
T  33700731 ttttttcaccctttaacaaaggaaaacaccattccggattatgaaatccagaaacttcaaggacattttt 33700662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 34821442 - 34821514
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaa 205  Q
    |||||||||||||| ||||| ||||||||| ||||  ||||||||||  ||||||||||||||||| ||||||    
T  34821442 cggattatgtaatccgaaaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 501240 - 501358
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    ||||||||| |||| | ||| ||||||||| ||||| ||||||||||  |||  ||||||||||||||||||||| ||  |||||   |||||| ||||     
T  501240 cggattatgcaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccggaaaaactc-ataactccatttttcgcccta 501338  T
Q  233 taacaaaggaaaacatcatt 252  Q
    ||||||||||||||| ||||    
T  501339 taacaaaggaaaacaccatt 501358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 32025099 - 32024985
Alignment:
Q  83 attacgtaatccggattgcatcagcaccatgaaaaagatggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttt 176  Q
    ||||||||||||| | |||||||| ||||||||||| ||||||||||       ||| |||| | ||||| ||||||||||| || |||||| |||||||    
T  32025099 attacgtaatccgaactgcatcaggaccatgaaaaaaatggtgtttagggggtgttcagattctataatccgaaaaaatcatatagtgcgccctattttt 32025000  T
Q  177 tgagatttccggatt 191  Q
    |||||||| ||||||    
T  32024999 tgagattttcggatt 32024985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 28830237 - 28830329
Alignment:
Q  179 agatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatccaaaa 272  Q
    ||||||| | ||||||||||||  ||||||||  ||| | |||||||||||||||||||||  |||||| ||||||  ||||||||||||||||    
T  28830237 agatttctgaattacaaaatcca-aaaaaatccataattcattttttcaccctttaacaaaaaaaaacaccatttcaaattataaaatccaaaa 28830329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 44085462 - 44085595
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatg-aaaaagatggtgttta-----tttcggattatgtaatcagaaaaaatcatgtaatgcgcctta-tt 173  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||||||      |||||||||||||||| ||| |||| ||||||  | || || ||    
T  44085462 ggattacgtaatctggattgcatcagcaccatgaaaaaaaatggtgtttagggctgttcggattatgtaatctgaagaaattatgtaacacaccctattt 44085561  T
Q  174 ttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||   ||||||| ||| ||||||||    
T  44085562 ttttgagatttttagattacataattcggaaaaa 44085595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 42937122 - 42937176
Alignment:
Q  212 gtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaat 266  Q
    |||||| ||||||||||||||||||||||| ||| | ||||||||||||| ||||    
T  42937122 gtaactcattttttcaccctttaacaaagggaaataccatttcggattatgaaat 42937176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 45244713 - 45244675
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  45244713 cggattacgtaatccggattgcattagcaccatgaaaaa 45244675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 46622885 - 46623002
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggatt-acaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    |||||||||||| | ||| ||||||||| | | | ||||||||||  ||||||| || | |||||||||||||| || || ||| ||||||||| | |||    
T  46622885 gattatgtaatccggaaacatcatgtaacgtgtcctattttttgaagtttccggttttataaaatccggaaaaa-tccgttactcattttttcatcattt 46622983  T
Q  234 aacaaaggaaaacatcatt 252  Q
    |||||| ||||||||||||    
T  46622984 aacaaaagaaaacatcatt 46623002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 48304596 - 48304558
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  48304596 cggattacgtaatccgaattgcatcagcaccatgaaaaa 48304558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 4394209 - 4394161
Alignment:
Q  219 attttttcaccctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||||||||||||||||| |||||||||||| | ||||||| ||||    
T  4394209 attttttcaccctttaacaaaagaaaacatcattccagattatataatc 4394161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 8735145 - 8735097
Alignment:
Q  220 ttttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||||||||||||||||||||| |||| || ||||| ||||||    
T  8735145 ttttttcaccctttaacaaaggaaaacaccattccgaattatgaaatcc 8735097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 9087386 - 9087338
Alignment:
Q  220 ttttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||||||||||||||||||||| |||| || ||||| ||||||    
T  9087386 ttttttcaccctttaacaaaggaaaacaccattccgaattatgaaatcc 9087338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 339
Target Start/End: Original strand, 33701462 - 33701622
Alignment:
Q  182 tttccggattacaaaatccggaaaaaatctgtaacttatttttt--caccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaa 278  Q
    ||||||||||||  |||||||||||| || |||||| |||||||  |||| ||||||||||||||||| ||||  ||||||  ||||||  |||| | ||    
T  33701462 tttccggattacgtaatccggaaaaattc-gtaactcattttttttcaccttttaacaaaggaaaacaccattctggattacgaaatccggaaacgtcaa 33701560  T
Q  279 gggcattttt-tgaaaaaatggggcatgcgaggaaagccataagatgggaaaagtaaatccc 339  Q
     |||||||||   ||||||| || |  || ||||||| |||| | |||||||||||||||||    
T  33701561 aggcatttttaaaaaaaaataggacgcgcaaggaaagtcatagggtgggaaaagtaaatccc 33701622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 33438561 - 33438486
Alignment:
Q  154 atcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccc 230  Q
    ||||||||| ||||| ||||||||||  |||  |||||||||||| | | ||||||| || ||||||||||||||||    
T  33438561 atcatgtaacgcgccctattttttgaagtttttggattacaaaattcag-aaaaatccgttacttattttttcaccc 33438486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 52777214 - 52777146
Alignment:
Q  221 tttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    ||||||| ||| ||||||||||||||| |||| | |||||| |||||| ||||| | ||||||||||||    
T  52777214 tttttcatcctataacaaaggaaaacaccattccagattatgaaatccgaaaacctcaagggcattttt 52777146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 80 - 339
Target Start/End: Complemental strand, 38640802 - 38640536
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgtttat-----ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattt 174  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||      |||||||||||||||| ||| ||||||| ||| ||||| |||||    
T  38640802 cggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgtttaggggtgttcggattatgtaatccgaataaatcatttaacgcgccctattt 38640703  T
Q  175 tttgagatttccggattacaaaatccggaaaaaatctgtaact--tattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaa 271  Q
    |||||||||||| ||||| ||||||| |||||  |||||| ||  | |||||||||||||||||||||||||||| |||| | |||||||||||||  ||    
T  38640702 tttgagatttccagattataaaatcc-gaaaatctctgtagctcattttttttcaccctttaacaaaggaaaacaccattccagattataaaatccggaa 38640604  T
Q  272 actttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagtaaatccc 339  Q
    |||| ||||||||| || |||||||| |||   || ||||||| |||| | ||| |||||||||||||    
T  38640603 acttcaagggcattattggaaaaaatagggtgcgcaaggaaagtcataggctggaaaaagtaaatccc 38640536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 27212726 - 27212575
Alignment:
Q  137 ttatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaac 236  Q
    |||||||||| ||||||||||||||| || || ||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||||||||| ||||    
T  27212726 ttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaatcc-gaaaaaacccgtaactcattttttcaccctataac 27212628  T
Q  237 aaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    |||||||||||||| |||||||||| |||||| |||| || || |||||||||    
T  27212627 aaaggaaaacatcagttcggattatgaaatccgaaaatttcaaaggcattttt 27212575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 28083477 - 28083612
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||||||||| ||||||||||  ||||||||||||||||||||| ||||| | || ||| ||||| ||||||||    
T  28083477 cggattatgtaatccggaaatatcatgtaatgcgccctattttttgaattttccggattacaaaatccgg-aaaaacccgttactcattttctcaccctt 28083575  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcca 269  Q
    ||||||| |||||||||||| ||||||||| ||||||    
T  28083576 taacaaaagaaaacatcattccggattatataatcca 28083612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 298
Target Start/End: Original strand, 36359626 - 36359850
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaagat-ggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttatt 173  Q
    ||||||||||||| ||||||||||| |||||||||||| |  ||||||||      |||| |||||||||||| ||||||||||||| | ||| | ||||    
T  36359626 ggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattatgtaatccgaaaaaatcatgttacgcgtcctatt 36359725  T
Q  174 ttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaaca-tcatttcggattataaaatcc-aaa 271  Q
    |||||||||||| |||||||||||||| |||||| || |||||| | ||||||||||||||||||| |||||||  |||| | |||||| ||||||  ||    
T  36359726 ttttgagatttctggattacaaaatcc-gaaaaattccgtaactca-tttttcaccctttaacaaaagaaaacacccattccagattatgaaatccggaa 36359823  T
Q  272 actttaagggcattttttgaaaaaatg 298  Q
    || ||||| ||||||||  ||||||||    
T  36359824 accttaagagcatttttgaaaaaaatg 36359850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 38692881 - 38693016
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |||| |||| ||||| |||||||| |  ||||||||||||||||| ||||||||| | || ||| ||||||||||||||    
T  38692881 cggattatgtaatccggaaacatcacgtaacgcgccctatttttttaagtttccggattacaaaattcggaaaaaacccgttactcattttttcaccctt 38692980  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| ||||||||| |||||    
T  38692981 taacaaaagaaaacatcattccggattatataatcc 38693016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 40620089 - 40620222
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||| ||| | ||| ||||||||||  ||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  40620089 cggattatgtaatccgaaaacatcatataacgtgccctattttttgaagtttccggattacaaaatccgg-aaaaatctgttactcattttttcaccctt 40620187  T
Q  233 taacaaaggaaaacatcatttcggattataaaatc 267  Q
     |||||| ||||||||||||  |||||||| ||||    
T  40620188 caacaaaagaaaacatcattatggattatataatc 40620222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 43388113 - 43388298
Alignment:
Q  83 attacgtaatccggattgcatcagcaccatgaaaaagatggtgttta------tttcggattatgta-atcagaaaaaatcatgtaatgcgccttatttt 175  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||      ||||||||||| |  ||  ||  |  |||||||||||||| ||||||    
T  43388113 attacgtaatccggattgcatcagcaccatgaaaaaaagggtgtttaggaggttttcggattattttgatgtgatta--tcatgtaatgcgccctatttt 43388210  T
Q  176 ttgagatttccggattacaaaatccggaaaaaatctgtaact--tattttttcaccctttaacaaaggaaaacatcatttcggattata 262  Q
    || ||||||||||||||||||||||  ||| |||| ||||||  | ||||||||| |||||||||||||||||| ||||||||||||||    
T  43388211 tttagatttccggattacaaaatcc-aaaagaatccgtaactcattttttttcacactttaacaaaggaaaacaccatttcggattata 43388298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 15799250 - 15799113
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||| | ||||||   |||||||||    
T  15799250 tttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgga-aaaacccgtaactccatttttcacc 15799152  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    || ||||||||||||| | |||| |||||||| ||||||    
T  15799151 ctataacaaaggaaaataccattccggattatgaaatcc 15799113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 339
Target Start/End: Complemental strand, 15957771 - 15957567
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||| ||||| | ||| |||||||||| |||| ||||||| ||  |||||| ||||||||||||||||||| ||  | ||| |||||| |||||||    
T  15957771 cggattatttaatccggaaacatcatgtaatacgccctatttttcgaagtttccgaattacaaaatccggaaaaa-tccattactcattttt-caccctt 15957674  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagt 332  Q
    ||||||| ||||||| |||||||||||||||||||| |||  | || ||||||||| |||||||| | ||   |||||||| ||||||| ||  ||||||    
T  15957673 taacaaaagaaaacaccatttcggattataaaatccgaaaactcaaaggcatttttggaaaaaatagagcgcacgaggaaatccataaggtgaaaaaagt 15957574  T
Q  333 aaatccc 339  Q
    || ||||    
T  15957573 aattccc 15957567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 339
Target Start/End: Complemental strand, 20891638 - 20891429
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcac 228  Q
    ||||||||||||||||  | ||| |||||||||   ||| ||||||||||  |||||||||||||||||||||| |||||| || ||| | |||||||||    
T  20891638 tttcggattatgtaattcggaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccgga-aaaatccgttactcatttttttcac 20891540  T
Q  229 cctttaacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaa 328  Q
    | ||||| ||| ||||||| ||||||||||||||||||||  |   | |||||||||||| ||||||||  |||  ||||||||| ||| | | ||||||    
T  20891539 catttaataaaagaaaacaccatttcggattataaaatccggatactcaagggcatttttggaaaaaataaggcgcgcgaggaaacccacagggtgggaa 20891440  T
Q  329 aagtaaatccc 339  Q
    |||||| ||||    
T  20891439 aagtaattccc 20891429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 24203783 - 24203985
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |     |||||||||||||| ||||||||||| | | |||||| |||||||    
T  24203783 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtc----gattacaaaatccg-aaaaaatctgttaatcatttttccaccctt 24203877  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttg-aaaaaatggggcatgcgaggaaagccataagatgggaaaag 331  Q
    ||||||| ||||||| |||| |||||||||||||||  ||  | || ||||||||| | ||||||| ||||| ||||||||| ||| | ||||| |||||    
T  24203878 taacaaaagaaaacaccattccggattataaaatccggaaactcaatggcatttttggaaaaaaatagggcacgcgaggaaacccacaggatggaaaaag 24203977  T
Q  332 taaatccc 339  Q
    ||||||||    
T  24203978 taaatccc 24203985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 39524795 - 39524672
Alignment:
Q  136 attatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaa 235  Q
    ||||||||||| ||||| |||||||||  |||| |||||||| |  |||||||||||||||||||||||||| ||  |  || |||||||||||||||||    
T  39524795 attatgtaatccgaaaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaa-tccattgctcattttttcaccctttaa 39524697  T
Q  236 caaaggaaaacatcatttcggatta 260  Q
    |||| ||||||||||||||||||||    
T  39524696 caaaagaaaacatcatttcggatta 39524672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 6156753 - 6156619
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||| | ||||||   ||||||||| |     
T  6156753 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgga-aaaacccgtaactccatttttcaccata 6156655  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  6156654 taacaaaggaaaacaccattccggattatgaaatcc 6156619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 31929229 - 31929338
Alignment:
Q  157 atgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcgg 256  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||| ||||||| || ||| | ||||||||||||||||||| |||||||||||| |||    
T  31929229 atgtaatgcgccctattttttgaaatttctggattacaaaatccgg-aaaaatccgttactca-tttttcaccctttaacaaaagaaaacatcattccgg 31929326  T
Q  257 attataaaatcc 268  Q
    |||||| |||||    
T  31929327 attatataatcc 31929338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 25747047 - 25746915
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| ||||| || |||||||  ||||||||||| ||||||||| ||||||| || ||| ||||||||| | ||    
T  25747047 cggattatgtaatccgaaaacatcatgtaacgcgcccta-tttttgaagtttccggattagaaaatccgg-aaaaatccgttactcattttttca-cttt 25746951  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| || ||||||||||||    
T  25746950 taacaaaagaaaacatcattccgaattataaaatcc 25746915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 37183881 - 37184015
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| | ||| ||||||||||  ||||  ||||||||||||  |||||| ||||| ||| |||||||||||| |    
T  37183881 cggattatgtaatctgaaaatatcatgtaacgtgccctattttttgaagtttcaagattacaaaatctagaaaaa-tctgttactcattttttcacccgt 37183979  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||| ||| ||||||||| |||||    
T  37183980 taacaaaagaaaacattattccggattatataatcc 37184015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 28594361 - 28594303
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28594361 aattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagatttt 28594303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 38871696 - 38871559
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| ||||||||| || || |||||| |||  ||| |||||||||||||||||| |||||| || ||| ||||||| ||     
T  38871696 tttcggattatgtaatccggaaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccgga-aaaatccgttactcattttttaact 38871598  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
     ||||||||| ||||||| |||| |||||||||||||||    
T  38871597 ttttaacaaaagaaaacaccattccggattataaaatcc 38871559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 33487632 - 33487498
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||| | ||||| ||||| ||| ||||| ||||||||||  ||| ||||||||||||| ||| ||||| | ||||||   |||||||||||     
T  33487632 cggattatgtaacccgaaaacatcatataacgcgccctattttttgaagttttcggattacaaaattcgg-aaaaacccgtaactccatttttcaccctg 33487534  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  33487533 taacaaaggaaaacaccattccggattatgaaatcc 33487498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 37095011 - 37095167
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||||  |||||| | ||| ||||||||| |||||||||||||| || ||| ||||||||||||||||| ||||||| ||||||   |||||||||    
T  37095011 tttcggatttggtaatccggaaacatcatgtaacgcgccttattttttaag-ttttcggattacaaaatccgg-aaaaatccgtaactccatttttcacc 37095108  T
Q  230 ctttaacaaaggaaaacatcatttcggattat-aaaatccaaaactttaagggcattttt 288  Q
    || ||||||||| ||||| |||| |||||||| ||| || ||||| | ||||||||||||    
T  37095109 ctataacaaagg-aaacaccattccggattatgaaattcgaaaacctcaagggcattttt 37095167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 27786367 - 27786425
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27786367 aattatgatttctcacaacttataaaatgtcattcggtattcaaaaattgatagatttt 27786425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 26190400 - 26190524
Alignment:
Q  136 attatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaa 235  Q
    ||||||||||| ||||| ||||||||| || || ||||||||||  ||||||||||||||||||||| ||||||| ||||||   ||||||||||  |||    
T  26190400 attatgtaatccgaaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgg-aaaaatccgtaactccatttttcacccgataa 26190498  T
Q  236 caaaggaaaacatcatttcggattat 261  Q
     ||||||||||| |||| | ||||||    
T  26190499 gaaaggaaaacaccattccagattat 26190524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 8032295 - 8032219
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||||||| | ||||||||||||||| ||| |||||||||| |||||| |||||||||||||| |||||    
T  8032295 ttcggattatgtaatccggaaaaatcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaa 8032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 4064819 - 4064953
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||| |||  |||| |||||||| |  ||||||||||||| ||||||||||||  | ||||||   |||||||||||     
T  4064819 cggattatgtaatccggaaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaaccc-gtaactccatttttcacccta 4064917  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  4064918 taacaaaggaaaacaccattccggattatgaaatcc 4064953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 296
Target Start/End: Complemental strand, 26319142 - 26318977
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| ||||||||| || || ||||||   || ||||||||| |||||||||||||||| || ||||||   |||||||||    
T  26319142 tttcggattatgtaatccggaaacatcatgtaacgcaccctattttggaag-tttccggataacaaaatccggaaaaa-tccgtaactccatttttcacc 26319045  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaa 296  Q
    || ||||||||||||||| |||| || ||||| ||||||  ||||   |||||||||||| |||||||    
T  26319044 ctataacaaaggaaaacaccattccgaattatgaaatccggaaaccgcaagggcatttttggaaaaaa 26318977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 26795432 - 26795378
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgataga 472  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  26795432 aattaggatttctcacaacttataaaatgtctttgggtattcaaaaattgataga 26795378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 472
Target Start/End: Complemental strand, 26806496 - 26806442
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgataga 472  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  26806496 aattaggatttctcacaacttataaaatgtctttgggtattcaaaaattgataga 26806442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 34530034 - 34529909
Alignment:
Q  149 aaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg--gaaaaaatctgtaacttattttttcaccctttaacaaaggaaaac 246  Q
    ||||||||||||||  |||| ||||||||||| |||  |||||||||||||||   |||||||| | |||| ||||||||| ||| |||||||||||||     
T  34530034 aaaaaatcatgtaacacgccctattttttgaggtttttggattacaaaatccgaaaaaaaaatccgcaactcattttttcatcctataacaaaggaaaaa 34529935  T
Q  247 atcatttcggattataaaatccaaaa 272  Q
     | | |||||||||| ||||||||||    
T  34529934 ctaagttcggattatgaaatccaaaa 34529909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 38372328 - 38372221
Alignment:
Q  136 attatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaa 235  Q
    ||||||||||| | ||| |||||||||  |||| |||||||| |  ||||||||||||||||||| | ||||||| || ||| |||||||||||||||||    
T  38372328 attatgtaatccggaaacatcatgtaacccgccctatttttttaagtttccggattacaaaatccag-aaaaatccgttactcattttttcaccctttaa 38372230  T
Q  236 caaaggaaa 244  Q
    |||| ||||    
T  38372229 caaaagaaa 38372221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 1350451 - 1350526
Alignment:
Q  222 ttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaa 296  Q
    |||||||||| ||||||||||||||| || |||||||||| |||||| |||| || |||||||||||| |||||||    
T  1350451 ttttcaccctataacaaaggaaaacaccagttcggattatgaaatccgaaaatttcaagggcatttttggaaaaaa 1350526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 28445450 - 28445578
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaagatggtgtttat--------ttcggattatgtaatcagaaaaaatcatgtaatgcgcctta 171  Q
    |||||||||||||||| | |||||| | ||||||||||| ||||||||||         |||||||| | ||||| |||||| |||| ||  ||||| ||    
T  28445450 cggattacgtaatccgaactgcatcggtaccatgaaaaa-atggtgtttagggagggtgttcggattttataatctgaaaaattcatttagcgcgcccta 28445548  T
Q  172 ttttttgagatttccggattacaaaatccg 201  Q
    ||||||||||||| ||||||||||||||||    
T  28445549 ttttttgagattttcggattacaaaatccg 28445578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 32842069 - 32842145
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    ||||||||||||||||   |||||| || ||  ||||| ||||||||||  ||||||||||||||||||||||||||    
T  32842069 ttcggattatgtaatcttgaaaaattatctagcgcgccctattttttgaagtttccggattacaaaatccggaaaaa 32842145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 34440813 - 34440688
Alignment:
Q  83 attacgtaatccggattgcatcagcaccatga--aaaagatggtgttta------tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattt 174  Q
    |||||||||||| |||||||||||||||||||  |||| | ||||||||      |||||||||||| |||| ||||| ||||||||| ||| | || ||    
T  34440813 attacgtaatccagattgcatcagcaccatgaaaaaaaaagggtgtttagggggttttcggattatgcaatccgaaaacatcatgtaacgcgtccta-tt 34440715  T
Q  175 tttgagatttccggattacaaaatccg 201  Q
    |||||  ||| ||||||||||||||||    
T  34440714 tttgaagttttcggattacaaaatccg 34440688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 14111922 - 14111851
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg 201  Q
    |||| ||||||||||||  |||| ||||||||| ||||| ||||||||||  |||| |||||||||||||||    
T  14111922 tttcagattatgtaatccaaaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatccg 14111851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 36359132 - 36359171
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaag 119  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  36359132 cggattacgtaatccgaattgcatcagcaccatgaaaaag 36359171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 38641219 - 38641181
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  38641219 cggattacgtaatccggattgcattagcaccatgaaaaa 38641181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 8739234 - 8739271
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8739234 ggattacgtaatccgaattgcatcagcaccatgaaaaa 8739271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 12465226 - 12465279
Alignment:
Q  154 atcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||  |||| ||||||||||  ||||||||||||||||||||||||||    
T  12465226 atcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaa 12465279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 28108354 - 28108271
Alignment:
Q  182 tttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    |||||||||||||||||| |||||||  | || ||| ||||| ||||| ||||||||| |||||||||||| ||||||||| ||||    
T  28108354 tttccggattacaaaatctggaaaaaccc-gttactcattttctcacc-tttaacaaaagaaaacatcattccggattatataatc 28108271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 16429147 - 16429110
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  16429147 ggattacgtaatccgaactgcatcagcaccatgaaaaa 16429110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 34440679 - 34440634
Alignment:
Q  221 tttttcaccctttaacaaaggaaaacatcatttcggattataaaat 266  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||    
T  34440679 ttttttaccctataacaaaggaaaacatcatttcagattatgaaat 34440634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 16428995 - 16428951
Alignment:
Q  220 ttttttcaccctttaacaaaggaaaacatcatttcggattataaa 264  Q
    |||||||||||| ||| ||||||||||| ||||||||||| ||||    
T  16428995 ttttttcaccctataataaaggaaaacaccatttcggattttaaa 16428951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 26095115 - 26095047
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatc 199  Q
    |||||||||||||||| |||||||  |||||| ||||  ||||||||| | |||  |||||||||||||    
T  26095115 ttcggattatgtaatccgaaaaaaatatgtaacgcgctctattttttgtggtttttggattacaaaatc 26095047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 28445598 - 28445646
Alignment:
Q  220 ttttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||| | |||||||||||||||| | |||||||| ||||||||    
T  28445598 ttttttcaccttataacaaaggaaaacattagttcggattttaaaatcc 28445646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 297
Target Start/End: Original strand, 3703347 - 3703513
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccc 230  Q
    |||| ||||||||||| |||||||||||||||  || | ||||||||||  ||| |||||||||||||||| |||||||| |||||| ||||||||||||    
T  3703347 ttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaatccg-aaaaaatccgtaactcattttttcaccc 3703445  T
Q  231 tttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaat 297  Q
    | |||||||||||||||  | |||||||||| ||||||  |||||| |||||||||||| ||| ||||    
T  3703446 tataacaaaggaaaacactagttcggattatgaaatccggaaacttcaagggcatttttggaagaaat 3703513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 296
Target Start/End: Complemental strand, 38536238 - 38536076
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |||||||||  |||| ||||||||||  |||||| ||||||||||||||| |||| | |||||||  |||||||||||     
T  38536238 cggattatgtaatctggaaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccgga-aaaacccgtaacttcatttttcacccta 38536140  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaa 296  Q
    ||||||||||||||| ||||||||||||| ||||||  || |  |||||||||||| |||||||    
T  38536139 taacaaaggaaaacaccatttcggattatgaaatccggaaatgcaagggcatttttggaaaaaa 38536076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 25491494 - 25491622
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||| | ||||||||||  |||||||||||||||||||| ||||| || || ||| ||||||||||||||    
T  25491494 cggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaactc-gttactcattttttcaccctt 25491592  T
Q  233 taacaaaggaaaacatcatttcggattata 262  Q
    ||||||| |||||||||||| |||||||||    
T  25491593 taacaaaagaaaacatcattccggattata 25491622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 297
Target Start/End: Complemental strand, 23523973 - 23523810
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| | ||| ||||||||| ||| | ||||||||||  ||||||||||||||||||| ||||||||| ||||||   ||||||||||| |    
T  23523973 ggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatcc-gaaaaaatccgtaactccatttttcaccctct 23523875  T
Q  234 aacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaat 297  Q
    ||||||||||||||||||| || ||||| |||||| ||||  | ||||||||||||  |||||||    
T  23523874 aacaaaggaaaacatcattccgaattatgaaatcctaaaatctcaagggcatttttgaaaaaaat 23523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 25752540 - 25752680
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcac 228  Q
    ||||||||||||||||| | ||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||  | ||| | |||||||||    
T  25752540 tttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccgg-aaaaatccattactcatttttttcac 25752638  T
Q  229 cctttaac--aaaggaaaacatcatttcggattataaaatcc 268  Q
    | ||||||  |||  ||||||||||| |||||||||||||||    
T  25752639 cttttaacaaaaaaaaaaacatcattccggattataaaatcc 25752680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 19835588 - 19835454
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| || || |||||||  |  ||||||||||||||||||||||||||  | || ||| ||||||||||||||    
T  19835588 cggattatgtaatccggaaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaaccc-gttactcattttttcaccctt 19835490  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| ||||||||| |||||    
T  19835489 taacaaaagaaaacatcattccggattatataatcc 19835454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 334
Target Start/End: Original strand, 48319161 - 48319365
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||||||||||||   ||| ||||||||| ||||| ||||||||||  |||||||||||| |||||||| ||||||| || ||| |||||||||||    
T  48319161 tttcggattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattac-aaatccgg-aaaaatccgtcactcattttttcacc 48319258  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc--aaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatggga 327  Q
    |||||||||| ||||||||||||  |||||| | |||||  ||  |||  |||| | |||| |||||||| ||||  |||||||||  |||| | |||||    
T  48319259 ctttaacaaaagaaaacatcattgtggattaaataatccggaatgcttcgagggtaattttggaaaaaatagggcgcgcgaggaaatacatagggtggga 48319358  T
Q  328 aaagtaa 334  Q
    |||||||    
T  48319359 aaagtaa 48319365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 296
Target Start/End: Original strand, 50392526 - 50392672
Alignment:
Q  151 aaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcaccctttaacaaaggaaaacatc 249  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||| |||||||||||||||||| |    
T  50392526 aaaatcatgtaacgcgccccattttttgagatttccggattacaaaatccgg-aaaaatccgtaactcatttttttcactctttaacaaaggaaaacacc 50392624  T
Q  250 atttcggattataaaatcc-aaaactttaagggcattttttgaaaaaa 296  Q
     || |||||||  ||||||  |||| | || ||||||||| |||||||    
T  50392625 gttccggattactaaatccggaaacctcaaaggcatttttcgaaaaaa 50392672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 54631562 - 54631696
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| || |||||||  ||||||||||||||||||||| ||||| | || ||| |||||| |||||||    
T  54631562 cggattatgtaatccggaaacatcatgtaacgcgccatactttttgaagtttccggattacaaaatccgg-aaaaacccgttactcatttttccaccctt 54631660  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||| ||||| ||||||||| |||||    
T  54631661 taacaaaagaaaacgtcattccggattatataatcc 54631696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 40703728 - 40703603
Alignment:
Q  137 ttatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttatt-ttttcaccctttaa 235  Q
    |||||||||| | ||| |||||||||||| || |||||||||| ||||||||||||||||||||||| |||||| || ||| ||| ||||||||||||||    
T  40703728 ttatgtaatccggaaacatcatgtaatgcaccctattttttgaaatttccggattacaaaatccgga-aaaatccgttactcattcttttcaccctttaa 40703630  T
Q  236 caaaggaaaacatcatttcggattata 262  Q
     ||| |||||||||||| | |||||||    
T  40703629 aaaaagaaaacatcattccagattata 40703603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 49397079 - 49396942
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||||||||||||  |||| ||| ||||| ||  | ||||||||||  |||||||||||||||||||||| |||||| ||||||   |||||||||    
T  49397079 tttcggattatgtaatccaaaaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccgga-aaaatccgtaactccatttttcacc 49396981  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    || ||| |||||||||||||||| |||||||| ||||||    
T  49396980 ctataataaaggaaaacatcattccggattatgaaatcc 49396942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 38416635 - 38416479
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccc 230  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||| |  |||||||||||||||||   ||||||||| | |||| ||||||||||||    
T  38416635 ttcggattatgtaatccgaaaaaatcatgtaacgtgccctatttttttatgtttccggattacaaaat-ttgaaaaaatccgcaactcattttttcaccc 38416537  T
Q  231 tttaacaaaggaaaacatcatttcggattat-aaaatccaaaactttaagggcatttt 287  Q
    | ||||||||||||||| |  ||| |||||| ||| || ||||||| |||| ||||||    
T  38416536 tataacaaaggaaaacacctattcagattatgaaattcgaaaacttcaaggacatttt 38416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 32441879 - 32441745
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||  ||||||||||  ||||||||||||||||||| | |||||||  |||||   |||||||||||     
T  32441879 cggattatgtaatccggaaacatcatgtaacgcgcgctattttttgaagtttccggattacaaaatccag-aaaaatccttaactccatttttcacccta 32441781  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  32441780 taacaaaggaaaacaccattccggattatgaaatcc 32441745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 37370807 - 37370749
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37370807 aattaagatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 37370749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 17933238 - 17933370
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| | ||| ||||||||| ||||| ||||||||||  |||| ||||||||||||| || ||||||| || | | |||||| |||||||||    
T  17933238 gattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatctgg-aaaaatccgttattcatttttgcacccttta 17933336  T
Q  235 acaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||| |||||||||||| | ||||||| |||||    
T  17933337 acaaaagaaaacatcattccagattatataatcc 17933370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 334
Target Start/End: Original strand, 2506130 - 2506333
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgcc-ttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttatttt-ttcaccc 230  Q
    |||||||||||||| | ||| ||||||||| ||||| |||||||||||  |||| | || |||||||  ||||||| || || ||| ||||| |||||||    
T  2506130 cggattatgtaatccggaaacatcatgtaacgcgcccttattttttgatgtttctgaatcacaaaatttggaaaaa-tccgttactcatttttttcaccc 2506228  T
Q  231 tttaacaaaggaaaacatca-tttcggattataaaatccaaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaa 329  Q
    ||||||||| |||||||||| |||| |||||||||||||  ||  | ||||||||||||  ||| ||| ||||  ||||||||| ||||| ||||| |||    
T  2506229 tttaacaaaagaaaacatcattttctgattataaaatccggaaactcaagggcatttttgaaaacaatagggcgcgcgaggaaatccataggatggaaaa 2506328  T
Q  330 agtaa 334  Q
    |||||    
T  2506329 agtaa 2506333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 42660430 - 42660562
Alignment:
Q  207 aatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaa-atggggcat 304  Q
    |||| |||||| |||||||||||||||||||||||||||||  |||  ||||||||||||||  |||||| ||||| |||||| |||||| || ||||      
T  42660430 aatccgtaactcattttttcaccctttaacaaaggaaaacactattctggattataaaatccggaaacttcaagggtatttttggaaaaatatagggcgc 42660529  T
Q  305 gcgaggaaagccataagatgggaaaagtaaatc 337  Q
    |||||||||| ||||  ||||||||||||||||    
T  42660530 gcgaggaaaggcatagaatgggaaaagtaaatc 42660562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 7931726 - 7931612
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| || |||||| ||||| ||||||||||  |||||||||| ||||||||||| |||| | || ||| ||||||||||||||    
T  7931726 cggattatgtaatccggaaacataatgtaacgcgccctattttttgaagtttccggattgcaaaatccgga-aaaacccgttactcattttttcaccctt 7931628  T
Q  233 taacaaaggaaaacat 248  Q
    ||||||| ||||||||    
T  7931627 taacaaaagaaaacat 7931612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 29822687 - 29822577
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| ||||  ||||||||||  |||||||||||||||||||||| |||| | ||||||   |||||||||||     
T  29822687 cggattatgtaatccgaaaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccgga-aaaacccgtaactccatttttcacccta 29822589  T
Q  233 taacaaaggaaa 244  Q
    ||||||||||||    
T  29822588 taacaaaggaaa 29822577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 6228931 - 6229044
Alignment:
Q  154 atcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcattt 253  Q
    ||||||||| ||||| ||||||||||  ||||||| ||||||||||||| ||||||| ||| ||   ||||||||||| ||||||||||||||| ||||     
T  6228931 atcatgtaacgcgccctattttttgaagtttccgggttacaaaatccgg-aaaaatccgtagctccatttttcaccctataacaaaggaaaacaccattc 6229029  T
Q  254 cggattataaaatcc 268  Q
    |||||||| ||||||    
T  6229030 cggattatgaaatcc 6229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 53594250 - 53594308
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  53594250 aattaggatttctcacaacttataaaatgtctttcggtattaaaaaattgatagatttt 53594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 53894111 - 53894218
Alignment:
Q  154 atcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcattt 253  Q
    ||||||||| ||||| ||||||||||  ||||| |||| |||||||||||||||  | || | | ||||||||||||||||||||| ||||||||||||     
T  53894111 atcatgtaacgcgccctattttttgaagtttcctgattgcaaaatccggaaaaaccc-gttagtcattttttcaccctttaacaaaagaaaacatcattc 53894209  T
Q  254 cggattata 262  Q
    |||||||||    
T  53894210 cggattata 53894218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 25539047 - 25539181
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    ||||||||||||||   ||| |||||||||   ||| ||||||||||  ||||||||||||||||||||| ||||| | ||||||   ||||||||| |     
T  25539047 cggattatgtaatccagaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccgg-aaaaacccgtaactccatttttcaccata 25539145  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  25539146 taacaaaggaaaacaccattccggattatgaaatcc 25539181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 55052718 - 55052852
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||| ||||| | ||| ||||| |||  |||| ||||||||||  ||||||||||||| ||||||||||||  | ||||||   |||||||||||     
T  55052718 cggattatataatccggaaacatcatctaacacgccctattttttgaagtttccggattacataatccggaaaaaccc-gtaactccatttttcacccta 55052816  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  55052817 taacaaaggaaaacaccattccggattatgaaatcc 55052852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 50392475 - 50392523
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta 129  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  50392475 ggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgttta 50392523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 8106462 - 8106387
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaa 206  Q
    |||||||||||||||  | ||||||||||||  ||||| ||||||||||  ||| |||||||||||||||||||||    
T  8106462 ttcggattatgtaatacggaaaaatcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 6003770 - 6003907
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgc-cttattttttgaga-tttccggattacaaaatccggaaaaaatctgtaacttattttttcaccc 230  Q
    |||||||||||||| | ||| ||||||||| || | ||||||||||   | ||||||||||| ||||| || |||||||| ||||||   ||||||||||    
T  6003770 cggattatgtaatccggaaacatcatgtaacgcactcttattttttttaagtttccggattataaaattcg-aaaaaatccgtaactccatttttcaccc 6003868  T
Q  231 tttaacaaaggaaaacatcatttcggattataaaatcca 269  Q
    | |||||||||||| || |||| |||||||| |||||||    
T  6003869 tataacaaaggaaaccaccattccggattatgaaatcca 6003907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 28100502 - 28100444
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||| ||||||||||||||||||||||||| ||  ||||||||||||| |||||||||    
T  28100502 aattaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagatttt 28100444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 34972935 - 34972787
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    |||||||||||||| || ||||| ||||||||| ||||| |||||||| |  ||||| |||||||||||||           ||||||   |||||||||    
T  34972935 tttcggattatgtagtccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatcc-----------gtaactccatttttcacc 34972847  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    || ||||||||||||||| |||| |||||||| ||||||  |||| | ||||||||||||    
T  34972846 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 34972787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 42660211 - 42660249
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  42660211 cggattacgtaatccggattgcattagcaccatgaaaaa 42660249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 50391677 - 50391715
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  50391677 cggattacgtattccggattgcatcagcaccatgaaaaa 50391715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 41762142 - 41762187
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaa 463  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||    
T  41762142 aattaggatttctcacaacttataaaatgtcttttggtatttaaaa 41762187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 18051118 - 18051166
Alignment:
Q  219 attttttcaccctttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||||||||||||||||| |||||||||||| | ||||||| ||||    
T  18051118 attttttcaccctttaacaaaagaaaacatcattccagattatataatc 18051166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 31582521 - 31582556
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgcc 168  Q
    |||||||||||||||||||| |||||||||||||||    
T  31582521 cggattatgtaatcagaaaacatcatgtaatgcgcc 31582556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 46440373 - 46440507
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcaccct 231  Q
    |||||||||||||| | ||| ||||||||| ||| | |||||||| |  ||||||||||| ||||| ||| ||||| | || | | | |||||||| |||    
T  46440373 cggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggattataaaattcgg-aaaaacccgttattcatttttttcatcct 46440471  T
Q  232 ttaacaaaggaaaacatcatttcggattataaaatc 267  Q
    |||||||| ||| |||||||| || |||||| ||||    
T  46440472 ttaacaaaagaatacatcattccgaattatataatc 46440507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 49002916 - 49003009
Alignment:
Q  149 aaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaa 243  Q
    ||||||||||||||  || | ||||||||||| ||| |||||||||||||  | | ||||| ||||||| ||||||||||  | |||||||||||    
T  49002916 aaaaaatcatgtaaa-cgtcctattttttgaggttttcggattacaaaatttgaataaaatttgtaactcattttttcacattataacaaaggaa 49003009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 52076996 - 52076950
Alignment:
Q  222 ttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||| ||||||||| |||||||||||||| ||||||| |||||    
T  52076996 ttttcaccatttaacaaaagaaaacatcatttccgattatataatcc 52076950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 19225697 - 19225831
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| || || ||||||||||  |||  |||||||||||||||||||||||| || ||| ||||||||||||||    
T  19225697 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaaatccgttactcattttttcaccctt 19225796  T
Q  233 taacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||| ||||||||||||||| |||||| ||||    
T  19225797 taacaaaagaaaacatcatttcgaattatataatc 19225831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 42925740 - 42925874
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||||  |||||||||||||||||| || ||||| | ||||||   |||||||||||     
T  42925740 cggattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcagg-aaaaacccgtaactccatttttcacccta 42925838  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  42925839 taacaaaggaaaacaccattccggattatgaaatcc 42925874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 43737184 - 43737066
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| ||||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||||| || ||| ||||||||||||||    
T  43737184 cggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgga-aaaatccgttactcattttttcaccctt 43737086  T
Q  233 taacaaaggaaaacatcatt 252  Q
    ||||||| ||||||| ||||    
T  43737085 taacaaaagaaaacaccatt 43737066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 3936167 - 3936034
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||| | || ||| |||||||||| ||||    
T  3936167 ggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgga-aaaacccgttactcattttttcactcttt 3936069  T
Q  234 aacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||| |||||||||||| ||||||||| |||||    
T  3936068 aacaaaagaaaacatcattccggattatataatcc 3936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 28230567 - 28230719
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |||| |||| ||||| ||||||||||  ||||||||||||||||||||| ||||||| || ||| ||||||| ||||||    
T  28230567 cggattatgtaatccggaaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatccgg-aaaaatccgttactcatttttt-accctt 28230664  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcatttt 287  Q
    ||||||| ||||||| ||||  |||||||||||||| |||  | |||||||||||    
T  28230665 taacaaaagaaaacaccattctggattataaaatccgaaaactcaagggcatttt 28230719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 24042287 - 24042441
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| | ||||||   |||||||||||     
T  24042287 cggattatgtaatccggaaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccgg-aaaaacccgtaactccatttttcacccta 24042385  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttt 288  Q
    || |||||||||||| |||| || ||||| |||| || ||  | ||||||||||||    
T  24042386 tatcaaaggaaaacaccattccgaattatgaaattcagaaactcaagggcattttt 24042441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 37518394 - 37518522
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | |||  ||||||||  |||| ||||||||||  |||| |||||| |||||||||||||| || || ||||||||||||||||||    
T  37518394 cggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaa-tccgttacttattttttcaccctt 37518492  T
Q  233 taacaaaggaaaacatcatttcggattata 262  Q
    ||| ||| ||||||||||||| ||||||||    
T  37518493 taataaaagaaaacatcattttggattata 37518522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 6467759 - 6467594
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccgga--ttacaaaatccggaaaaaatctgtaacttattttttcac 228  Q
    |||||||||||||||| ||| |||||||||||  | || |||||||||||||||| |||  ||||| ||| ||| ||||||| |||||| | ||||||||    
T  6467759 ttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagatttctggattttacataattcgg-aaaaatccgtaactca-tttttcac 6467662  T
Q  229 cctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaa 295  Q
    | ||||||||||||||||| |||| || || |||||||||  |||||| |||||||||||| ||||||    
T  6467661 catttaacaaaggaaaacaccattccgaatcataaaatccggaaacttcaagggcatttttggaaaaa 6467594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 47202554 - 47202399
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  ||| |||||||||||||| || ||||||| ||||||   |||||||||||     
T  47202554 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctgg-aaaaatccgtaactccatttttcacccta 47202456  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttt 288  Q
    ||||||| ||||||| |||| |||||||| ||||||  |||| | ||||||||||||    
T  47202455 taacaaaagaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 47202399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 36468636 - 36468840
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| |||| | ||||||||  |||| ||||||||||  |||||  |||||||||||||| ||||||| || ||| ||||||||| ||||    
T  36468636 cggattatgtaatctgaaaca-tcatgtaacacgccctattttttgaagtttccatattacaaaatccgg-aaaaatccgttactcattttttca-cctt 36468732  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttt-tgaaaaaatggggcatgcgaggaaagccataagatgggaaaag 331  Q
    ||||||| |||||||||||| || ||||||||||    || || ||||||||||||   ||||||| | ||  ||||| ||| ||||| | |||||||||    
T  36468733 taacaaaagaaaacatcattccgaattataaaatttggaaattcaagggcatttttgaaaaaaaatagagcgcgcgagtaaacccatagggtgggaaaag 36468832  T
Q  332 taaatccc 339  Q
    ||||||||    
T  36468833 taaatccc 36468840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 8154962 - 8154865
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcac 228  Q
    ||||||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||||| |||||||  ||||||||    
T  8154962 tttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgga-aaaatccgtaacttcatttttcac 8154865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 268
Target Start/End: Original strand, 42877149 - 42877278
Alignment:
Q  138 tatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaaca 237  Q
    ||||||||| | ||| || |||||| ||||| ||||||||    ||||| ||||||||||||||||||||  | || ||| |||||||||||||||||||    
T  42877149 tatgtaatccggaaacattatgtaacgcgccctattttttttattttcccgattacaaaatccggaaaaacac-gttactcattttttcaccctttaaca 42877247  T
Q  238 aaggaaaacatcatttcggattataaaatcc 268  Q
    || |||||||||||| ||||||||| |||||    
T  42877248 aaagaaaacatcattccggattatataatcc 42877278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 36408431 - 36408298
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcaccct 231  Q
    |||||||||||||| | ||| ||||||||  ||||||||||||||||  |||| ||||||||||||||||| |||||| || ||| | ||||||||||||    
T  36408431 cggattatgtaatccggaaacatcatgtatcgcgccttattttttgaagtttctggattacaaaatccgga-aaaatccgttactcatttttttcaccct 36408333  T
Q  232 ttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||  ||||||| |||||   ||||||||||||    
T  36408332 ttaacaa--gaaaacaccattttaaattataaaatcc 36408298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 26555138 - 26555241
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccg-gaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||| ||||||  |||||||||||||| ||||| ||||||||| ||| | ||||||||||||||||  ||||||||  ||||| |||||||||||    
T  26555138 ttcggattaggtaatccaaaaaaatcatgtaacgcgccctattttttgtgatattcggattacaaaatccgaaaaaaaatccttaactaattttttcacc 26555237  T
Q  230 cttt 233  Q
    ||||    
T  26555238 cttt 26555241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 9151850 - 9151774
Alignment:
Q  157 atgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  9151850 atgtaatgcgccctattttttgaagtttccggattacaaaatccgga-aaaacctgttactcattttttcacccttta 9151774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 36629263 - 36629101
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| | ||| ||||||||| ||||| |||||||| |  || || |||||||||||||||| |||||| || ||| ||||||||||||| ||    
T  36629263 gattatgtaatccggaaacatcatgtaacgcgccctatttttttaagttaccagattacaaaatccgga-aaaatccgttactcattttttcaccctcta 36629165  T
Q  235 ac-aaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaat 297  Q
    || |||| |||||| |||| |  ||||||||||||  ||  | || ||||||||| ||||||||    
T  36629164 acaaaagaaaaacaccattccatattataaaatccggaaactcaatggcatttttggaaaaaat 36629101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 28349236 - 28349384
Alignment:
Q  186 cggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcatt 285  Q
    ||||||||||||| | |||||| || |||||| ||||||||||| |||||||||| |||||| |||||| |||||| ||||||  ||   |||||| |||    
T  28349236 cggattacaaaattcagaaaaattc-gtaactcattttttcaccatttaacaaagaaaaacaccatttccgattatgaaatccggaaacgtaagggtatt 28349334  T
Q  286 ttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagtaaa 335  Q
    |||  ||||||| || | || |||||||  |||| | |||||||||||||    
T  28349335 tttgaaaaaaataggacgtgtgaggaaaatcatagggtgggaaaagtaaa 28349384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 33574130 - 33574238
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| ||||| ||||||||| || || |||||||| |  |||||||||||||||||||  ||||||||  ||||||  ||||||||     
T  33574130 tttcggattatgtaatccgaaaacatcatgtaacgcaccctattttttaaagtttccggattacaaaatcc-aaaaaaatccataacttcatttttcact 33574228  T
Q  230 ctttaacaaa 239  Q
    || |||||||    
T  33574229 ctataacaaa 33574238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 3304858 - 3304976
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttatttttt-gagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    ||||||||||||| | ||| |||||||||  | || |||||||| ||  |||| ||||||||||||||||||||| || ||||||   |||||||||||     
T  3304858 ggattatgtaatccggaaatatcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaa-tccgtaactccatttttcacccta 3304956  T
Q  233 taacaaaggaaaacatcatt 252  Q
    ||||||||||||||| ||||    
T  3304957 taacaaaggaaaacaccatt 3304976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 28346191 - 28346053
Alignment:
Q  149 aaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacat 248  Q
    ||||||||||||| ||  || || |||||||  |||| |||||||||||| |||||| | || |||||| |||||||  | |||||||||||||||||||    
T  28346191 aaaaaatcatgtagtgaaccctactttttgaagtttctggattacaaaattcggaaaca-tccgtaactcattttttt-ctctttaacaaaggaaaacat 28346094  T
Q  249 catttcggattataaaatcca-aaactttaagggcattttt 288  Q
    |||| | |||||| |||| || |||||| || |||||||||    
T  28346093 cattccagattatgaaattcagaaacttcaaaggcattttt 28346053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 31643101 - 31642967
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| |||||||||  | || ||||||||||  |||||  ||||||| |||| |||||| || ||||||   |||||||||||     
T  31643101 cggattatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaa-tccgtaactccatttttcacccta 31643003  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| ||||||| |||| | |||||| ||||||    
T  31643002 taacaaacgaaaacaccattccagattatgaaatcc 31642967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 31985615 - 31985685
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgcctta--ttttttgagatttccggattacaaaatc 199  Q
    |||| ||||||||||| ||||||||||||||| ||||| ||  ||||||||| ||| ||||||||||||||    
T  31985615 ttcgaattatgtaatccgaaaaaatcatgtaacgcgccctattttttttgaggttttcggattacaaaatc 31985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 3634368 - 3634426
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||| ||||||||||||||||||||||||  || |||||||||||||| || ||||||    
T  3634368 aattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgatttt 3634426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 31985680 - 31985763
Alignment:
Q  205 aaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcatttt 287  Q
    ||||||||||||| ||||||||| | | |||||||||||||  | | |||||||||| |||||| |||| || |||||||||||    
T  31985680 aaaatctgtaactcattttttcatcttataacaaaggaaaaactgaattcggattatgaaatccgaaaatttcaagggcatttt 31985763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 33151267 - 33151149
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgaga-tttccggattacaaaatccggaaaaaatctgtaacttatttttt-caccc 230  Q
    |||||||||||||| ||| | ||||| ||||||||| ||||||||   | |||||| |||||||||||    ||||||| ||  || ||||||| |||||    
T  33151267 cggattatgtaatccgaagacatcatataatgcgccctattttttttaagtttccgaattacaaaatct---aaaaatccgttcctcatttttttcaccc 33151171  T
Q  231 tttaacaaaggaaaacatcatt 252  Q
    ||||||||| ||||||||||||    
T  33151170 tttaacaaaagaaaacatcatt 33151149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 16278235 - 16278187
Alignment:
Q  81 ggattacgtaatccggattgcatcagcaccatgaaaaagatggtgttta 129  Q
    ||||||||||||||| | |||||||||||||||||| |  |||||||||    
T  16278235 ggattacgtaatccgaactgcatcagcaccatgaaataactggtgttta 16278187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 3494 - 3701
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatct-gtaacttattttttcaccct 231  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  ||||  ||||||||||| || ||||||  | || ||| |||||||||||||    
T  3494 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaaaattcgttactcattttttcaccct 3593  T
Q  232 ttaacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaag 331  Q
    |||||||| ||||||| |||| |||||||||| || |  ||  | |||||||||||| |||||||| ||||  ||||||||| ||| | | |||||||||    
T  3594 ttaacaaaagaaaacaccattccggattataagattcggaaactcaagggcatttttggaaaaaatagggcgcgcgaggaaacccaaagggtgggaaaag 3693  T
Q  332 taaatccc 339  Q
    ||||||||    
T  3694 taaatccc 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 7412891 - 7412754
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| |||||||||  |||| ||||||||||  |||||||||||||||||||||| |||| | || ||| |||||||||||    
T  7412891 tttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccgga-aaaacccgttactcattttttcacc 7412793  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||| |||||||||||| | ||||||| |||||    
T  7412792 ctttaacaaaagaaaacatcattccagattatataatcc 7412754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 17264470 - 17264332
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  ||||| |||||||||||||||| |||||| || ||| |||||||||||||     
T  17264470 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccgga-aaaatccgttactcattttttcaccctg 17264372  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaa 272  Q
    ||||||| ||||||||||||  |||| ||| |||||||||    
T  17264371 taacaaaagaaaacatcattcaggatcatataatccaaaa 17264332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 4508401 - 4508605
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||| ||||| | ||| |||||||||  |||| || ||||||| ||||| |||||| |||||||||||||| || || ||| |||||||||||||     
T  4508401 cggattatataatccggaaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaa-tccgttactcattttttcaccctc 4508499  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagt 332  Q
    ||||||| ||||||| ||||  ||||||||||||||  ||  |||||| || |||||| |||||| ||||  ||||||||| ||| | | ||||||||||    
T  4508500 taacaaaagaaaacaccattctggattataaaatccggaaacttaaggaca-tttttggaaaaatagggcgcgcgaggaaacccacagggtgggaaaagt 4508598  T
Q  333 aaatccc 339  Q
    || ||||    
T  4508599 aactccc 4508605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 294
Target Start/End: Original strand, 24604459 - 24604623
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaactta-ttttttcacc 229  Q
    |||||||||||||||| ||| |||||||||||  |||| ||||||||||  |||  |||||||||||| ||| |||||||  ||||| | ||||||||||    
T  24604459 ttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaattcgg-aaaaatccttaactcatttttttcacc 24604557  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaa 294  Q
    || | ||||||||||||| || |||||| ||| |||||| ||||||| |||| |||||||||||||    
T  24604558 ctatgacaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaggacattttttgaaaa 24604623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 5699618 - 5699484
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| |||||||| |  ||||||||||||||||| | ||||||| | ||||||   |||||||||||     
T  5699618 cggattatgtaatccggaaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattc-gaaaaaacccgtaactccatttttcacccta 5699520  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||||||||||| |||| |||||||| ||||||    
T  5699519 taacaaaggaaaacaccattccggattatgaaatcc 5699484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 32035173 - 32035039
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||||| ||||||   ||||||| | |     
T  32035173 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgga-aaaatccgtaactccatttttcatcata 32035075  T
Q  233 taacaaaggaaaacatcatttcggattataaaatcc 268  Q
    ||||||| |||||||||||| | |||||| ||||||    
T  32035074 taacaaaagaaaacatcattccagattatgaaatcc 32035039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 14587660 - 14587770
Alignment:
Q  134 ggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttt 233  Q
    ||||||||||||||| ||| ||||||||| ||||| |||||||| |  ||| ||||||||||||||||| |||||||  | ||| |||||||||||||||    
T  14587660 ggattatgtaatcaggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccgg-aaaaatcccttactcattttttcacccttt 14587758  T
Q  234 aacaaaggaaaa 245  Q
    |||||| |||||    
T  14587759 aacaaaagaaaa 14587770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 2813323 - 2813459
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaa--atccggaaaaaatctgtaacttattttttcaccc 230  Q
    |||||||||||||| | ||| |||||||||  | |||||||||||||  |||||||||||||||  |||||| ||||||||||||||   ||||||||||    
T  2813323 cggattatgtaatccggaaacatcatgtaacacaccttattttttgaagtttccggattacaaaatatccgg-aaaaatctgtaactccatttttcaccc 2813421  T
Q  231 tttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    | ||| ||||||||||| |||| || ||||| ||||||    
T  2813422 tataataaaggaaaacaccattccgaattatgaaatcc 2813459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 296
Target Start/End: Original strand, 33413448 - 33413608
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||||||||| | ||| ||||||||| ||||| |||||||  || ||||||||||||||||| | |||||| || ||||||   ||||||||||| ||    
T  33413448 gattatgtaatctggaaacatcatgtaacgcgccctatttttgaag-tttccggattacaaaattcagaaaaattc-gtaactccatttttcaccctata 33413545  T
Q  235 acaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaaaaaa 296  Q
    ||||||||||||| |||| |||||||| ||||||  |||| | || ||||||||| |||||||    
T  33413546 acaaaggaaaacaccattccggattatgaaatccggaaacatcaaaggcatttttggaaaaaa 33413608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 334
Target Start/End: Complemental strand, 23406856 - 23406656
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    ||||||||||||||   ||| ||||  ||| ||||| ||||||||||  |||||||||||| |||| |||||||| || ||||||   |||||||||||     
T  23406856 cggattatgtaatccagaaacatcaactaacgcgccctattttttgaagtttccggattacgaaattcggaaaaactc-gtaactccatttttcacccta 23406758  T
Q  233 taacaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaatggggcatgcgaggaaagccataagatgggaaaagt 332  Q
    ||||||||||||||| |||| |||||||  ||||||  ||  | || |||||||||  ||||||| ||||  ||||||||| ||| | | ||||||||||    
T  23406757 taacaaaggaaaacaccattccggattacgaaatccggaaaatcaatggcatttttgaaaaaaatagggcccgcgaggaaatccacagggtgggaaaagt 23406658  T
Q  333 aa 334  Q
    ||    
T  23406657 aa 23406656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 296
Target Start/End: Original strand, 3717384 - 3717544
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||| ||||| | ||| ||||||||| ||||| || |||||||  ||||||||||||||||| |||||||   |  || || ||||||||||||||||    
T  3717384 gattatataatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaattcggaaaagcccatta-ctcattttttcacccttta 3717482  T
Q  235 acaaaggaaaacatcatttcggattataaaatccaaaactttaagggcattttttgaaaaaa 296  Q
    ||||| ||||||| ||||   |||||||||||||  ||  | |||||||||||| |||||||    
T  3717483 acaaaagaaaacaccattcaagattataaaatccggaaactcaagggcatttttggaaaaaa 3717544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 9905180 - 9905104
Alignment:
Q  131 ttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaa 207  Q
    |||||||||||||||| | |||||||| |||  ||||| |||||||||| ||||||| |||||||||||||||||||    
T  9905180 ttcggattatgtaatccggaaaaatcacgtagcgcgccctattttttgaaatttccgaattacaaaatccggaaaaa 9905104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 1945630 - 1945763
Alignment:
Q  135 gattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacccttta 234  Q
    |||||| ||||| | |||| | |||||| || || || |||||||  ||| ||||||||||||||||| ||||||| |||||| |||||||||||||||     
T  1945630 gattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatccgg-aaaaatccgtaactcattttttcaccctttg 1945728  T
Q  235 ac-aaaggaaaacatcatttcggattataaaatcc 268  Q
     | |||| |||||| |||| |||||||||||||||    
T  1945729 tcaaaagaaaaacaccattccggattataaaatcc 1945763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 5638878 - 5638776
Alignment:
Q  194 aaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc-aaaactttaagggcattttttgaa 292  Q
    |||||||||||||| || ||||||   ||||||||||| ||||| ||||||||| |||| |||||||| ||||||  |||| | |||||||||||| |||    
T  5638878 aaaatccggaaaaa-tccgtaactctatttttcaccctataacagaggaaaacaccattccggattatgaaatccggaaacctcaagggcatttttggaa 5638780  T
Q  293 aaaa 296  Q
    ||||    
T  5638779 aaaa 5638776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 142062 - 142194
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||||||||| | ||| ||||||||| ||||| ||||||||||  |||||||||||||||||| || |||||||||| ||  | ||||||||||||    
T  142062 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctgg-aaaaatctgttacaca-tttttcaccctt 142159  T
Q  233 taacaaaggaaaacatcatttcggattataaaatc 267  Q
    ||||||| |||||||||||| || |||||| ||||    
T  142160 taacaaaagaaaacatcattccgaattatataatc 142194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 9593 - 9730
Alignment:
Q  130 tttcggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcacc 229  Q
    ||||||||||||||||| | ||| ||||||||| ||| | ||||||||||  ||||||||||||||||| ||| ||||| | ||||||   |||||||||    
T  9593 tttcggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcgg-aaaaacccgtaactctatttttcacc 9691  T
Q  230 ctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    || |||||||||||||||  ||| || ||||| ||||||    
T  9692 ctataacaaaggaaaacacaattccgaattatgaaatcc 9730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 23182 - 23050
Alignment:
Q  133 cggattatgtaatcagaaaaaatcatgtaatgcgccttattttttgagatttccggattacaaaatccggaaaaaatctgtaacttattttttcaccctt 232  Q
    |||||||| ||||| | ||| |||||||||||| || ||||||||||  ||||||||||| ||||| ||| ||||||| || ||| | ||||||||||||    
T  23182 cggattatataatccggaaacatcatgtaatgcaccctattttttgaagtttccggattataaaattcgg-aaaaatccgttactca-tttttcaccctt 23085  T
Q  233 taacaaaggaaaacatcatttcggattataaaatc 267  Q
     |||||| |||||||| ||| ||||||||| ||||    
T  23084 caacaaaagaaaacataattacggattatataatc 23050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 140612 - 140534
Alignment:
Q  189 attacaaaatccggaaaaaatctgtaacttattttttcaccctttaacaaaggaaaacatcatttcggattataaaatcc 268  Q
    |||||||||||||||||||  || || || ||||||||||| ||||||||| |||||||||||| ||||||||| |||||    
T  140612 attacaaaatccggaaaaatccttta-ctcattttttcaccttttaacaaaagaaaacatcattccggattatataatcc 140534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 11717 - 11659
Alignment:
Q  418 aattaggatttctcacaacttataaaatgtccttcggtattcaaaaattgatagatttt 476  Q
    ||||| ||||||||||||||||||||||||  || |||||||||||||| || ||||||    
T  11717 aattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgatttt 11659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 205642 - 205680
Alignment:
Q  80 cggattacgtaatccggattgcatcagcaccatgaaaaa 118  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  205642 cggattacgtaatccggattgcattagcactatgaaaaa 205680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University