View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_12 (Length: 448)
Name: NF5794_2D_low_12
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 180 - 432
Target Start/End: Original strand, 30737111 - 30737354
Alignment:
| Q |
180 |
tttgatcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctagactctatggaagcatctctatgctaggattcaacaaggcatctc |
279 |
Q |
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| T |
30737111 |
tttgttcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctaaactctatggaagcatctctatgctaggattcaacaaggaatggc |
30737210 |
T |
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| Q |
280 |
tctacatctggttgaacagaagttgcgttccccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
379 |
Q |
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| T |
30737211 |
a-tccatt--------cagaagttgcgttccccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
30737301 |
T |
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| Q |
380 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatga |
432 |
Q |
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| T |
30737302 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatga |
30737354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 30736901 - 30737065
Alignment:
| Q |
30 |
cgaattacttacaaagagaaacccaaaatctcaggttagctagccctcatagtgaacatgtaattttcttaacaaattgcttgactcagtaacagtagaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30736901 |
cgaattacttacaaagagaaacccaaaatctcaggttagctagctctcttagtgaacatgtaattttcttaacaaattgcttgactcagtaacagtagaa |
30737000 |
T |
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| Q |
130 |
aatcataaacatgtaagaaccaaatagtttct-------attcttttacattgatgttttgatca |
187 |
Q |
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| T |
30737001 |
aatcataaacatgtaagaaccaaatagttcctatggacaattctcttacattgatgttttgatca |
30737065 |
T |
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