View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_13 (Length: 375)
Name: NF5794_2D_low_13
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 184 - 356
Target Start/End: Original strand, 19656401 - 19656573
Alignment:
| Q |
184 |
cagaggtagcatttattttctgacttaaatttcttgaattgtccaataacaggtgtttgaaattgatttatttcgggtgttgagagcaaagtggggtgaa |
283 |
Q |
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| T |
19656401 |
cagaggtagcatttattttctgacttaaatttcttgaattgtccaataacaggtgtttgaaattgatttatttcgggtgttgcgagcaaagtggggtgaa |
19656500 |
T |
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| Q |
284 |
aagtttagttctttcatatcaaagaaagttgttgcaatagcaggagatgttgctgttgaaaatttgggaataa |
356 |
Q |
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| T |
19656501 |
aagtttagttctttcatatcaaagaaggttgtggcaatagcaggagatgttgctgttgaaaatttgggaataa |
19656573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 189 - 356
Target Start/End: Original strand, 19873052 - 19873219
Alignment:
| Q |
189 |
gtagcatttattttctgacttaaatttcttgaattgtccaataacaggtgtttgaaattgatttatttcgggtgttgagagcaaagtggggtgaaaagtt |
288 |
Q |
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| T |
19873052 |
gtagcatttatcttctgacttacatttcttgaaatctccgataccaggtttttgaaattgatttatttcgcgtgctgcgagccaagtggggtgaaaattt |
19873151 |
T |
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| Q |
289 |
tagttctttcatatcaaagaaagttgttgcaatagcaggagatgttgctgttgaaaatttgggaataa |
356 |
Q |
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| T |
19873152 |
tagctctttcatatcaaagaaggttgtggcaatagcaggagatgttgctattgaaaatttgggaataa |
19873219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 19530004 - 19530061
Alignment:
| Q |
299 |
atatcaaagaaagttgttgcaatagcaggagatgttgctgttgaaaatttgggaataa |
356 |
Q |
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| T |
19530004 |
atatcaaagaaggttgtagcagtagcaggagatgctgcagttgaaaatttgggaataa |
19530061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 19895287 - 19895206
Alignment:
| Q |
275 |
tggggtgaaaagtttagttctttcatatcaaagaaagttgttgcaatagcaggagatgttgctgttgaaaatttgggaataa |
356 |
Q |
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| T |
19895287 |
tggggtgaagattttaattcttttatatcaaagaaggttgtggcagtagcaggagatgttgcagttgaaaatttgggaataa |
19895206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 30888542 - 30888602
Alignment:
| Q |
292 |
ttctttcatatcaaagaaagttgttgcaatagcaggagatgttgctgttgaaaatttggga |
352 |
Q |
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| T |
30888542 |
ttctttcatatcaaagaaagttacagctatagcaggagatgtttctgttcaaaatttggga |
30888602 |
T |
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