View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_15 (Length: 375)
Name: NF5794_2D_low_15
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 5979080 - 5978735
Alignment:
| Q |
21 |
ctagtttcagaagtggtagtagtagaaggtaaaggtgctcttctgaaacgtgcatgaccagttcttgttctattttgattcagaagtgaaataacattct |
120 |
Q |
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| T |
5979080 |
ctagtttcagaagtggcagtagtagaaggtaaaggtgctcttctgaaacgtgcatgaccagttcttgttctattttgattcagaagtgaaataacattct |
5978981 |
T |
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| Q |
121 |
taaactttgaaactgctacatcagctacggttttatagtccatggaattagggtttgaatttgaagaacatgtttgtgacgatgatagtaatttaatgag |
220 |
Q |
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| T |
5978980 |
taaactttgaaactgctacatcagctacggttttatagtccatggaattagggtttgaatttgaagaacatgtttgtgacgatgatagtaatttaatgag |
5978881 |
T |
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| Q |
221 |
tttttctatgctttgtaaaccagaagcagcttcttgaactgcattctcttggaatttgtttgttaaattgttgtttttgtgtcctatcattagttcaacg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5978880 |
tttttctatgctttgtaaaccagaagcagcttcttgaactgcattctcttggaatttgtttgttaaattgttgtttttgtgtcctatcattagttcaacg |
5978781 |
T |
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| Q |
321 |
gccatagtacttacttacaaaggagaagaaaaaggaaaggaataataaag |
370 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5978780 |
gccatagtac----ttacaaaggagaagaaaaaggaaaggaataataaag |
5978735 |
T |
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