View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_20 (Length: 264)
Name: NF5794_2D_low_20
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 11128328 - 11128480
Alignment:
| Q |
42 |
tattgctttgataaacaattgagaaaaatataacaaagaaggaaaacaaatatatgttttcaccaaagactttatttttgctagacctttaacgatgatg |
141 |
Q |
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| T |
11128328 |
tattgttttgataaacaattgagaaaaatataacaaagaaggcaaacaaatatatgtcttcaccaaagacttcatttttgctatacctcta---atgatg |
11128424 |
T |
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| Q |
142 |
atgtttgaagtaagttttgttgtcatgttc--atatggatttaatggtgataaaat |
195 |
Q |
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| T |
11128425 |
ttgtttgaaataagttttgttgtcatgttcatatatggatttaaaggtgataaaat |
11128480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 11124003 - 11124147
Alignment:
| Q |
48 |
tttgataaacaattgagaaaaatataacaaagaaggaaaacaaatatatgttttcaccaaagactttatttttgctagacctttaacgatgatgatgttt |
147 |
Q |
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| T |
11124003 |
tttgataaacaattcagaaaaatataacaaagaaggcaaacaaatatacgtcttcaccaaagacttcatttttgctatacctcta---atgatgttattt |
11124099 |
T |
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| Q |
148 |
gaagtaagttttgttgtcatgttcatatggatttaatggtgataaaat |
195 |
Q |
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| T |
11124100 |
gaaataagttttgttgtcatgttcatatggatttaaaggtgataaaat |
11124147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 11143492 - 11143598
Alignment:
| Q |
4 |
atcacaaacatcacacttatttaaagagttacggtatttattgctttgataaacaattgagaaaaatataacaaagaaggaaaacaaatatatgttttca |
103 |
Q |
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| T |
11143492 |
atcaaaaaaatcacacttgtttaaagatttacggtacttattgctttgataaacaattgagaaaaatataacaaagaaggaaaacaaatatatgttttca |
11143591 |
T |
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| Q |
104 |
ccaaaga |
110 |
Q |
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| T |
11143592 |
ccaaaga |
11143598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 11114251 - 11114442
Alignment:
| Q |
13 |
atcacacttatttaaagagttacggtatt-tattgctttgataaacaattgagaaaaatataacaaagaag----gaaaacaaatatatgttttcaccaa |
107 |
Q |
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| T |
11114251 |
atcacactcgtttaaagatttatggtagtctattgttttgataaacagttgagaaaaatataacaaagaagctaggcaaacaaatatatgtcttcaccaa |
11114350 |
T |
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| Q |
108 |
agactttatttttgctagacctttaacgatgatgatgtttgaagtaagttttgttgtcatgttcatatggatttaatggtgataaaatgccatag |
202 |
Q |
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| T |
11114351 |
agacttcatttttgcaataccttcaa---tgatgttgtttgaaataagttttgttgttatgttcatatggatttaaaggtgatgaaatgtcatag |
11114442 |
T |
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