View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_2D_low_27 (Length: 244)

Name: NF5794_2D_low_27
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_2D_low_27
NF5794_2D_low_27
[»] chr8 (4 HSPs)
chr8 (22-108)||(11917827-11917913)
chr8 (16-108)||(11910037-11910129)
chr8 (158-229)||(11909968-11910038)
chr8 (158-229)||(11917912-11917982)
[»] chr1 (1 HSPs)
chr1 (32-111)||(32044590-32044669)
[»] chr4 (1 HSPs)
chr4 (29-72)||(17433465-17433508)
[»] chr7 (1 HSPs)
chr7 (29-70)||(19416375-19416416)
[»] chr5 (2 HSPs)
chr5 (29-70)||(13002567-13002608)
chr5 (29-70)||(13077225-13077266)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 11917827 - 11917913
Alignment:
Q  22 agtaaagatttaaaccaaaggttatattgaatatataaatcatatacaatcgactagattaaaagtaatacattatattcctagcta 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11917827 agtaaagatttaaaccaaaggttatattgaatacataaatcatatacaatcgactagattaaaagtaatacattagattcctagcta 11917913  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 11910129 - 11910037
Alignment:
Q  16 acatcaagtaaagatttaaaccaaaggttatattgaatatataaatcatatacaatcgactagattaaaagtaatacattatattcctagcta 108  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11910129 acattaagtaaagatttaaaacaaaggttatattgaatacataaatcatatacaatcgactagattaaaagtaatacattagattcctagcta 11910037  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 11910038 - 11909968
Alignment:
Q  158 taactaaaagaagaagagatgaatgttgttccagaagcatccataagcttgaactcaagctccaaatctctc 229  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11910038 taactaaaa-aagaagagatgaatgttgttcgagaagcatccataagcttgaactcaagctccaaatctctc 11909968  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 11917912 - 11917982
Alignment:
Q  158 taactaaaagaagaagagatgaatgttgttccagaagcatccataagcttgaactcaagctccaaatctctc 229  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11917912 taactaaaa-aagaagagatgaatgttgttcgagaagcatccataagcttgaactcaagctccaaatctctc 11917982  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 32044669 - 32044590
Alignment:
Q  32 taaaccaaaggttatattgaatatataaatcatatacaatcgactagattaaaagtaatacattatattcctagctactt 111  Q
    ||||||||||||||||||||||  |||||||||||||||||  ||||||||| |||||||||||| | ||||||||||||    
T  32044669 taaaccaaaggttatattgaatgcataaatcatatacaatcagctagattaagagtaatacattaaaatcctagctactt 32044590  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 17433465 - 17433508
Alignment:
Q  29 atttaaaccaaaggttatattgaatatataaatcatatacaatc 72  Q
    ||||||||||||| |||||||||||  |||||||||||||||||    
T  17433465 atttaaaccaaagattatattgaatgcataaatcatatacaatc 17433508  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 19416375 - 19416416
Alignment:
Q  29 atttaaaccaaaggttatattgaatatataaatcatatacaa 70  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  19416375 atttaaactaaagattatattgaatacataaatcatatacaa 19416416  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 13002567 - 13002608
Alignment:
Q  29 atttaaaccaaaggttatattgaatatataaatcatatacaa 70  Q
    ||||||||||||| |||||||||||  |||||||||||||||    
T  13002567 atttaaaccaaagattatattgaatgcataaatcatatacaa 13002608  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 13077225 - 13077266
Alignment:
Q  29 atttaaaccaaaggttatattgaatatataaatcatatacaa 70  Q
    ||||||||||||| |||||||||||  |||||||||||||||    
T  13077225 atttaaaccaaagattatattgaatgcataaatcatatacaa 13077266  T

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