View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_31 (Length: 232)
Name: NF5794_2D_low_31
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_31 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36798192 - 36798406
Alignment:
| Q |
1 |
gtgctcatgaactgtagctcttagttcacatactaaacggtggtgctcctcaagccacctcgcatattccacgtcgaacattgcagcctctgaaatattc |
100 |
Q |
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| T |
36798192 |
gtgctcatgaactgcagctcttagttcacatactaaacggtggtgctcctcaagccacctcgcatattccacgtcgaacattgcagcctctgaaatattc |
36798291 |
T |
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| Q |
101 |
atttcaaatatttgtataagaggtt-nnnnnnnntttgatcatggcaaaacatataagaggttaaattgattaaacatgcattataaggtaaaagagatc |
199 |
Q |
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| T |
36798292 |
atttcaaatatttgtataagaggttaaaaaaaaaattgatcatggcaaaacatataagaggttaaattgattaaacatgcattataaggtaaaagagatc |
36798391 |
T |
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| Q |
200 |
acacctgagctaatg |
214 |
Q |
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| T |
36798392 |
acacctgagctaatg |
36798406 |
T |
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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 24834 - 24912
Alignment:
| Q |
17 |
gctcttagttcacatactaaacggtggtgctcctcaagccacctcgcatattccacgtcgaacattgcagcctctgaaa |
95 |
Q |
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|||||||| ||||| |||| | ||| |||||||| | ||||||| |||| ||||| || ||||||||||||||||||| |
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| T |
24834 |
gctcttagctcacacactagcctgtgatgctcctctaaccacctcccatactccacatcaaacattgcagcctctgaaa |
24912 |
T |
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