View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_32 (Length: 203)
Name: NF5794_2D_low_32
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 4904000 - 4904157
Alignment:
| Q |
1 |
cttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggcttaacagtctgttgcggtgctggttttcggttctggtg |
100 |
Q |
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| T |
4904000 |
cttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggtttaacagtctgttgcggtgctggttttcggttctggtg |
4904099 |
T |
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| Q |
101 |
taggcagttagcttctaagctgcttctttaggattgtttgtagttggtctgtttgtta |
158 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
4904100 |
taggcagttagcttctaagctgcttctttaggaatgattgtagttggtctgtttgtta |
4904157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 22153557 - 22153441
Alignment:
| Q |
1 |
cttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggt |
99 |
Q |
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||||||||| |||| ||||||||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| |||| |
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| T |
22153557 |
cttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggt |
22153458 |
T |
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| Q |
100 |
gtaggcagttagcttct |
116 |
Q |
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||| ||||||||||||| |
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| T |
22153457 |
gtatgcagttagcttct |
22153441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 22209472 - 22209356
Alignment:
| Q |
1 |
cttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggt |
99 |
Q |
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||||||||| |||| ||||||||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| |||| |
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| T |
22209472 |
cttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggt |
22209373 |
T |
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| Q |
100 |
gtaggcagttagcttct |
116 |
Q |
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||| ||||||||||||| |
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| T |
22209372 |
gtatgcagttagcttct |
22209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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