View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_2D_low_4 (Length: 833)
Name: NF5794_2D_low_4
Description: NF5794_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_2D_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 180 - 817
Target Start/End: Original strand, 30737111 - 30737732
Alignment:
| Q |
180 |
tttgatcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctagactctatggaagcatctctatgctaggattcaacaaggcatctc |
279 |
Q |
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| T |
30737111 |
tttgttcacatgtgcaagtttagtcaaataaagatctacacgatacatgaatctaaactctatggaagcatctctatgctaggattcaacaaggaatggc |
30737210 |
T |
|
| Q |
280 |
tctacatctggttgaacagaagttgcgttccccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
379 |
Q |
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| T |
30737211 |
a-tccatt--------cagaagttgcgttccccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctg |
30737301 |
T |
|
| Q |
380 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcagtaa |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30737302 |
agtcatgtaatcgatcctctgatggaacaattgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcaggaa |
30737401 |
T |
|
| Q |
480 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttacatctctcgatgtaaacactatgcaatgaatt |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
30737402 |
aaaccaagtcgagcatttgtagaaaaatgcctggtctcgaatgttttaaatacatccgagccaacttac--------atgtaaacactatggaatgaatt |
30737493 |
T |
|
| Q |
580 |
catcattgaagcaaggacacaaaatctattggaagcctccaatacaaaagaagcatcatagatgttttatatacat-catgttaaattatgccttgaccc |
678 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| | |
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| T |
30737494 |
catccttgaagcaaggacacgaaatctattggaagcctccaatacaaaagaagtatcatagatgttttatatacatccatgttaacttatgccttgactc |
30737593 |
T |
|
| Q |
679 |
aagcataataagtcatgtctgtgaagatccttcactcagatatcagattcctccacttcagcatagagaaagactctatttaagtgtgtcaaatttgcat |
778 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
30737594 |
aagcataataagtcatgtctgtgaagatccttcactcatatatcagactcgtccacttcagcatagagaaagcctctatttaagtgtgtcaaatttacat |
30737693 |
T |
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| Q |
779 |
caagaaataccttcttgataaatgcacaaacttgttgag |
817 |
Q |
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| T |
30737694 |
caagaaataccttcttgataaatgcagaaacttgttgag |
30737732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 30736901 - 30737065
Alignment:
| Q |
30 |
cgaattacttacaaagagaaacccaaaatctcaggttagctagccctcatagtgaacatgtaattttcttaacaaattgcttgactcagtaacagtagaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30736901 |
cgaattacttacaaagagaaacccaaaatctcaggttagctagctctcttagtgaacatgtaattttcttaacaaattgcttgactcagtaacagtagaa |
30737000 |
T |
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| Q |
130 |
aatcataaacatgtaagaaccaaatagtttct-------attcttttacattgatgttttgatca |
187 |
Q |
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| T |
30737001 |
aatcataaacatgtaagaaccaaatagttcctatggacaattctcttacattgatgttttgatca |
30737065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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