View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_1 (Length: 784)
Name: NF5794_high_1
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 18 - 768
Target Start/End: Complemental strand, 7368829 - 7368077
Alignment:
| Q |
18 |
gtcaatgggataaatctgagaaatatggagtaaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatacaatagttgtagaaacttgaagag |
117 |
Q |
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| T |
7368829 |
gtcaatgggaaaaatctgagaaatatggagtaaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatataatagttttagaaacttgaagag |
7368730 |
T |
|
| Q |
118 |
ggcaggggtgaaggaccccataaatcagcatgaataacttcaaaaggattagaatgggtttacctaggcaacaaaaattacacaaaacgggcaaattttt |
217 |
Q |
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| T |
7368729 |
ggcaggggtgaaggaccccataaatcagcatgaataacttcaaaaggattagaatgggtttacctaggcaacaaacattacacaaaacgggcaaattttt |
7368630 |
T |
|
| Q |
218 |
attgatgaaacatattgtattttataacggctgcattactaatttaataacatttatatgagaacggccaagtctacaacaacaacaataaagtcttatc |
317 |
Q |
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| T |
7368629 |
-ttgatgaaacatactgtattttataacggctgcattactaatttaataacatttatatgagaaaggccaagtctacaacaacaacaataaagtcttatc |
7368531 |
T |
|
| Q |
318 |
tcattaagtgggatc----atgtggatcaaactacgccataatatttatggtaaataatatttcaaatcagttcattaatctctagatgataagactacc |
413 |
Q |
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| T |
7368530 |
tcattaggtgggatcaactatgtgaatcaaactacgtcataatatttatggtaaataatatttcgaatcagttcattaatctctagatgataagactacc |
7368431 |
T |
|
| Q |
414 |
aagtctattgtgccaattttgaattggtaaaagaaggaacacagcnnnnnnnnnnnnnnnnntttactaatggaagtaacctggaataagagaaacgaaa |
513 |
Q |
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| T |
7368430 |
aagtctattgtgccaattttgaattggtaaaagaaggaacacag-aaaaaataaacaaaaaatttactaatggaagtaacctggaataagagaaacgaaa |
7368332 |
T |
|
| Q |
514 |
tgtacattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaatgagatatcgaacttatatgat |
613 |
Q |
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| T |
7368331 |
tgtgcattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaatgagatatcgaacttatatgac |
7368232 |
T |
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| Q |
614 |
aaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtga |
713 |
Q |
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| T |
7368231 |
aaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgagcaacctataactaacttattgagagtga |
7368132 |
T |
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| Q |
714 |
ttatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
768 |
Q |
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| T |
7368131 |
ttatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
7368077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 648 - 757
Target Start/End: Complemental strand, 7377196 - 7377088
Alignment:
| Q |
648 |
aaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtgattatatactctaatacattagaaacaaagaaaat |
747 |
Q |
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| T |
7377196 |
aaaattgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata-attaaaaacagagaaaat |
7377098 |
T |
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| Q |
748 |
aggaagaaac |
757 |
Q |
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|||||||||| |
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| T |
7377097 |
aggaagaaac |
7377088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 7377529 - 7377476
Alignment:
| Q |
49 |
aaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatacaatagttgt |
103 |
Q |
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| T |
7377529 |
aaatagatacaagtg-atttagaaaatgtgtcaagaaagaaaatacaatagttgt |
7377476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 37430417 - 37430484
Alignment:
| Q |
293 |
acaacaacaacaataaagtcttatctcattaagtgggatc----atgtggatcaaactacgccataat |
356 |
Q |
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| T |
37430417 |
acaacaacaacaaccaagccttatctcactaagtgggatcggctatatggatcaaactacgccataat |
37430484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 26490596 - 26490530
Alignment:
| Q |
297 |
caacaacaataaagtcttatctcattaagtgggatc----atgtggatcaaactacgccataatatt |
359 |
Q |
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| T |
26490596 |
caacaacaatcaagtcttatcttactaagtgggatcgactatatggatcaaattacgccataatatt |
26490530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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