View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_11 (Length: 414)
Name: NF5794_high_11
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 47798679 - 47799071
Alignment:
| Q |
11 |
aatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacaatagagttatgaaaaataattcaataattttgatttccaaattaac |
110 |
Q |
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| T |
47798679 |
aatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacattagagttatgaaaaataattcaataattttgatttccaaattaac |
47798778 |
T |
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| Q |
111 |
aacttttagtactatacatgtatcacctatatcttgcttcttaatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtc |
210 |
Q |
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| T |
47798779 |
aacttttagtactatacatatatcacctatatcttgcttcttaatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtc |
47798878 |
T |
|
| Q |
211 |
aactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccatt |
310 |
Q |
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| T |
47798879 |
aactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccatt |
47798978 |
T |
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| Q |
311 |
taatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttgtctcatgatgatg |
403 |
Q |
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| T |
47798979 |
taatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttgtctcatgatgatg |
47799071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 194 - 390
Target Start/End: Complemental strand, 39777284 - 39777099
Alignment:
| Q |
194 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
293 |
Q |
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| T |
39777284 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaaccaagtactaga |
39777185 |
T |
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| Q |
294 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
390 |
Q |
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| T |
39777184 |
attcattactctccattta-----------gttagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
39777099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 39777464 - 39777384
Alignment:
| Q |
11 |
aatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacaatagagttatgaaaaataattcaataa |
91 |
Q |
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| T |
39777464 |
aatgagcttccttatgtatccactttttgaaattaatggaaactgcaaattacgttagagttatgaaaaataattcaataa |
39777384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 39812184 - 39812147
Alignment:
| Q |
210 |
caactacatagatcaaaccacatcataatgttctatca |
247 |
Q |
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| T |
39812184 |
caactacatggatcaaacgacatcataatgttctatca |
39812147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 7513019 - 7513063
Alignment:
| Q |
203 |
gtggagtcaactacatagatcaaaccacatcataatgttctatca |
247 |
Q |
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| T |
7513019 |
gtggggtcaactacatagatcaaattacgtcataatgttctatca |
7513063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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