View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_18 (Length: 313)
Name: NF5794_high_18
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 41151660 - 41151377
Alignment:
| Q |
18 |
taaacaagagaaattaaggattactcttggtgaacaatcgaagatgatttcttgatcacttgtgcaactctcatgatagaaaatgaatccataaaaatta |
117 |
Q |
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| T |
41151660 |
taaacaagagaaattaaggattactcttggtgaacaatcaaagatgatttcttggtcacttgtgcaactctcatgatagaaaatgaatccataaaaatta |
41151561 |
T |
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| Q |
118 |
ggatttgttcatgttaaacatcggaagttaatttttataactcttttgtatttctttgatagtgagaatatgagaactaccgtctccgttgaacttaaat |
217 |
Q |
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| T |
41151560 |
gggtttgttcatgttaaacatcggaagttaatttttgtaactcttttgtgtttctttgatagtgagaatatgagaactactgtct-cgttaaacttaagt |
41151462 |
T |
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| Q |
218 |
caatttcaattaaactgagtaaacaatcttggtgtttgtatactccctttatctattgtctctgatatgattgtgctgaagaatt |
302 |
Q |
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| T |
41151461 |
caatttcaattaaactgagtaaacaatgttggtgtttgtatactccctttatctattgtctctgatatgattgtgctgaagaatt |
41151377 |
T |
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