View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_2 (Length: 565)
Name: NF5794_high_2
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 10 - 537
Target Start/End: Complemental strand, 7020827 - 7020296
Alignment:
| Q |
10 |
aagaatataacgtaagaaatagaaaactttaaaacagagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtacaa |
109 |
Q |
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| T |
7020827 |
aagaatataacgtaagaaatagaaaactttaaaacggagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtacaa |
7020728 |
T |
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| Q |
110 |
cacataaagttttgtttcatatgtgacgtgatttatcatgaaatttttgtttcagtttatattattcatcatgattttttgtttcatatatagtgctgat |
209 |
Q |
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| T |
7020727 |
cacataaagttttgtttcatatgtgacgtgatttatcatgaaatttttgtttcagtttatatgattcatcatgattttttgtttcatatatagtgctgat |
7020628 |
T |
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| Q |
210 |
tgggaggtctcatataaaaaacacaagaaggatccagttcacgggctaaggt----attatcatgcaaccatgtacacagaagtgcctttttatcttttg |
305 |
Q |
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| T |
7020627 |
tgggaggtctcatatagaagacacaagaaggatccagttcacgggctaaggtattaattatcatgcaaccatgtacacagaagtgcctttttatcttttg |
7020528 |
T |
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| Q |
306 |
gannnnnnnctacttctgtgtttgtggttaaggaaccaaagtggctccttgcatccttcttactcagcaatttttcaagaaaatgacaaattggtgtggc |
405 |
Q |
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| T |
7020527 |
gatttttttctacttctgtgtttgtggttaaggaaccaaagtggctccttgcatccttcttactcagcaatttttcaagaaaatgacaaattggtgtggc |
7020428 |
T |
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| Q |
406 |
agtaattctgacaatatttattagtccgtaccaatgatcatggtttttgtacacttgtattagctagatttgtcacatttgatgttcctatattcttttg |
505 |
Q |
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| T |
7020427 |
agtaattctgacaatatttattagtccgtaccaatgatcatggtttttgtacacttgtattagctagatttgtcacatttgatgttcctatattgttttg |
7020328 |
T |
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| Q |
506 |
atcataaaactattaaaacaaatgaaactatt |
537 |
Q |
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| T |
7020327 |
atcataaaactattaaaacaaatgaaactatt |
7020296 |
T |
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