View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_20 (Length: 311)
Name: NF5794_high_20
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 28609384 - 28609683
Alignment:
| Q |
12 |
aacctgtgagcatcgagttccatgaaaccgagtctctaaaatgcatcttattaaaaatcttcctcgccttcacgatgtcaccacacttagaatacatgtc |
111 |
Q |
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| T |
28609384 |
aacccgtgagcatcgagttccacgaaactgagtctctaaaatgcatcttattaaaaatcttcctcgccttcacgatgtcaccacacttagaatacatgtc |
28609483 |
T |
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| Q |
112 |
aacaagtgcattaagcacaaacccgtcatcccaaaacccacaacgcaccacatgacgatgcacctcttccccaactcccaccaacccaattccaccacaa |
211 |
Q |
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| T |
28609484 |
aacaagtgcattaagcacaaacccgtcatcccaaaacccacaacgcaccacatgacgatgcacctcttccccaacacccaccaacccaattccaccacaa |
28609583 |
T |
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| Q |
212 |
actttaagaacacgaggaaatgtgaaaatatctggttcaacaccctcttccaccatttgaaaataaagcgcaatagcatcatcataaagacccatctctg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609584 |
actttaagaacacgaggaaatgtgaaaatatctggttcaacaccctcttccaccatttgaaaataaagcgcaatagcatcatcataaagacccatctctg |
28609683 |
T |
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