View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_high_21 (Length: 310)

Name: NF5794_high_21
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_high_21
NF5794_high_21
[»] chr8 (1 HSPs)
chr8 (3-300)||(12521428-12521725)
[»] chr4 (6 HSPs)
chr4 (83-267)||(53000067-53000251)
chr4 (80-240)||(12634151-12634310)
chr4 (80-149)||(15154647-15154716)
chr4 (77-300)||(8898762-8898981)
chr4 (66-147)||(10520192-10520273)
chr4 (82-144)||(7180437-7180499)
[»] chr1 (2 HSPs)
chr1 (66-265)||(45962911-45963108)
chr1 (82-258)||(28553635-28553810)
[»] chr7 (4 HSPs)
chr7 (84-267)||(10234916-10235099)
chr7 (82-158)||(9046446-9046522)
chr7 (122-182)||(19708169-19708229)
chr7 (82-149)||(1941430-1941497)
[»] chr2 (4 HSPs)
chr2 (66-265)||(24184978-24185175)
chr2 (82-147)||(31603035-31603100)
chr2 (77-143)||(16918027-16918093)
chr2 (226-267)||(31602924-31602965)
[»] chr3 (8 HSPs)
chr3 (45-159)||(20487879-20487996)
chr3 (66-184)||(31139153-31139271)
chr3 (66-265)||(8890739-8890935)
chr3 (66-265)||(12881607-12881804)
chr3 (66-267)||(4285096-4285301)
chr3 (224-265)||(4853696-4853737)
chr3 (224-265)||(4875430-4875471)
chr3 (83-156)||(11271663-11271736)
[»] chr5 (2 HSPs)
chr5 (69-261)||(26266687-26266877)
chr5 (85-154)||(16766324-16766393)
[»] chr6 (1 HSPs)
chr6 (82-144)||(31817596-31817658)
[»] scaffold1485 (1 HSPs)
scaffold1485 (224-265)||(1260-1301)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 12521428 - 12521725
Alignment:
Q  3 aatctattttattggagattctattctaaaataacattgatattattcaatcatatttcaaataacgaagaactgagatgtgaagtttgatattcaaaca 102  Q
    ||||||||||||| ||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  12521428 aatctattttatttgagtttctattctaacataaccttgttattattcaatcatatttcaaataacgaagtactgagatgtgaagtttgatgttcaaaca 12521527  T
Q  103 aatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgttgtacttaaatggtctcaacaattatcaaccattaga 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| |||    
T  12521528 aatgaggttagataagacaatcaaaacatgagaatagatttgagagtgttgggacaacaatgttgaaattaaatggtctcaacaattatcaatcatgaga 12521627  T
Q  203 atagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaatggatacaccgtccttagaaatgaaatcagtataa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  12521628 atagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaatggatacattgtccttagaaacgaaatcagtataa 12521725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 267
Target Start/End: Complemental strand, 53000251 - 53000067
Alignment:
Q  83 tgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgttgtacttaaatggtctc 182  Q
    ||||||||||||||  | |||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||| || |||| ||| ||| ||| ||    
T  53000251 tgaagtttgatattgtatcaaatgaggttagacaagataatcaaaacatgtgaatagttttgagagttttgggacaataaggttgcactcaaagggtatc 53000152  T
Q  183 aacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaatg 267  Q
    ||  || || |||||| | ||||   |  || ||| |||  |||||||||||| ||||   ||||||||||||||||||||||||    
T  53000151 aatgatgataaaccatgataatatgtttaattattgttttgagatacattcatttatttagagaggaaacatgaaataccaaatg 53000067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 12634310 - 12634151
Alignment:
Q  80 atgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatg-ttgtacttaaatgg 178  Q
    |||||||||||||||||  |||||||||| ||||| |||| || |||||||||||| || ||||  |||| ||| ||||| || | ||| ||||||| ||    
T  12634310 atgtgaagtttgatattagaacaaatgagattagacaagataaacaaaacatgagagtaattttatgagttttgagacaataaggtttgcacttaaaggg 12634211  T
Q  179 tctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtatt 240  Q
    |||||| ||| ||||||||| |||||||  | ||| ||||||   |||||||||||||||||    
T  12634210 tctcaataataatcaaccatgagaataggtttgattattatt--gagatacattcatgtatt 12634151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 15154647 - 15154716
Alignment:
Q  80 atgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagt 149  Q
    |||||||||||||||||  | |||||||| ||||| |||| || ||||||||||||||||||||| ||||    
T  15154647 atgtgaagtttgatattggagcaaatgagattagacaagataaacaaaacatgagaatagttttgtgagt 15154716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 300
Target Start/End: Original strand, 8898762 - 8898981
Alignment:
Q  77 gagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgttgtacttaaat 176  Q
    |||| |||||||||||||||  |  ||||||| ||||| |||| || ||||| || ||||||| ||  ||||| ||||||||| || |||| ||| |||     
T  8898762 gagaggtgaagtttgatattggattaaatgagattagacaagataaacaaaatattagaatagatta-agagtcttgggacaataaagttgcactcaaag 8898860  T
Q  177 ggtctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaatggatacaccg 276  Q
    ||||||||  || ||| ||||  |||||||  | ||| ||| ||   ||||||||||||||||||  |||||||| ||||||||||||| | ||| |  |    
T  8898861 ggtctcaatgataatcgaccaagagaatagtgttgattattgttg--agatacattcatgtattgggagaggaaatatgaaataccaaa-gaatatattg 8898957  T
Q  277 tccttagaaatgaaatcagtataa 300  Q
    |||||||||||||| ||| |||||    
T  8898958 tccttagaaatgaattcattataa 8898981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 10520273 - 10520192
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgaga 147  Q
    ||||||| ||||| |||||||| ||||||||  | || | ||| ||||| |||| |||||||||||||||||| ||||||||    
T  10520273 aacgaagtactgaaatgtgaagattgatatttgatcatacgagtttagacaagataatcaaaacatgagaataattttgaga 10520192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 7180437 - 7180499
Alignment:
Q  82 gtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttg 144  Q
    |||||||||||||||  | |||||||| ||||| | || |||||||| |||||||||||||||    
T  7180437 gtgaagtttgatattagatcaaatgagattagacaggataatcaaaatatgagaatagttttg 7180499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 265
Target Start/End: Original strand, 45962911 - 45963108
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgt 165  Q
    |||||||||||  || ||||||||| |||||  | |||||||| |||||||||| || ||||||||||||||||||||| |||| || |||||| || ||    
T  45962911 aacgaagaactaggaggtgaagtttaatattagatcaaatgagattagataagataaacaaaacatgagaatagttttgtgagtttttggacaataaggt 45963010  T
Q  166 tgtacttaaatggtctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    || ||| |||  |||||||  || || |||||| || |||  || ||| ||| ||   ||||||||||||||||| | ||| ||||||||||||||||||    
T  45963011 tgcactcaaagagtctcaatgataataaaccatgaggataagcttgattattgtt--gagatacattcatgtattttgagatgaaacatgaaataccaaa 45963108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 258
Target Start/End: Original strand, 28553635 - 28553810
Alignment:
Q  82 gtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaat-gttgtacttaaatggtc 180  Q
    ||||||||||||||| || |||||||| ||||||||||  | |||||||||| ||||||||||  ||| ||| ||||| |||  ||| ||| ||| ||||    
T  28553635 gtgaagtttgatattgaatcaaatgagattagataagatgaacaaaacatgaaaatagttttgtaagtcttgagacaataatatttgcactcaaaaggtc 28553734  T
Q  181 tcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaa 258  Q
    |||| ||| |||||||||   | |||||| |||  |||||   ||||||||||||||||| | | || ||||||||||    
T  28553735 tcaataataatcaaccatgtaagtagacttgattgttatt--gagatacattcatgtattctgaaagaaaacatgaaa 28553810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 267
Target Start/End: Original strand, 10234916 - 10235099
Alignment:
Q  84 gaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgttgtacttaaatggtctca 183  Q
    |||||||||||||  |  ||||||| ||||| |||  ||||||| |||||||||||||||||| || ||||||||| || |||| ||| ||| | |||||    
T  10234916 gaagtttgatatttgataaaatgagattagacaaggtaatcaaagcatgagaatagttttgagtgtcttgggacaataaggttgcactcaaaggatctca 10235015  T
Q  184 acaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaatg 267  Q
    || || ||||||||  | ||||  || ||  |||||||  |||||||||||||||||    |||||||||||||||||||||||    
T  10235016 acgataatcaaccacgaaaataagcttgactattattttgagatacattcatgtattacgggaggaaacatgaaataccaaatg 10235099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 9046446 - 9046522
Alignment:
Q  82 gtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggaca 158  Q
    |||||||||||||||  || ||||||  ||||| ||||||| ||||||||||||||||||||| |||| ||| ||||    
T  9046446 gtgaagtttgatattagaataaatgatattagacaagacaaacaaaacatgagaatagttttgtgagtcttgagaca 9046522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 19708229 - 19708169
Alignment:
Q  122 atcaaaacatgagaatagttttgagagtgttgggacaacaatgttgtacttaaatggtctc 182  Q
    |||||||||||||||||  ||||||||| ||||||||| || |||||||| ||| ||||||    
T  19708229 atcaaaacatgagaataactttgagagtcttgggacaataaggttgtactcaaagggtctc 19708169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 1941497 - 1941430
Alignment:
Q  82 gtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagt 149  Q
    |||||||||||| ||  |||||||||| ||||| |||| || |||||| |||||||||||||| ||||    
T  1941497 gtgaagtttgattttagaacaaatgagattagacaagataaacaaaacgtgagaatagttttgtgagt 1941430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 265
Target Start/End: Complemental strand, 24185175 - 24184978
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgt 165  Q
    ||||||||||  ||| || || |||||||||  | |||||||| ||||| |||| || ||||||| ||||||||||||  |||| ||||||||| || ||    
T  24185175 aacgaagaacaaagaggtcaaatttgatattggatcaaatgagattagacaagataaacaaaacacgagaatagttttccgagtcttgggacaataaggt 24185076  T
Q  166 tgtacttaaatggtctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    || ||| ||| ||||||||  || ||||||||| ||||||| || ||| ||| ||   ||||| ||||||||||| | || ||||| |||||||||||||    
T  24185075 tgcactcaaagggtctcaatgataatcaaccatgagaataggcttgattattgtt--gagatatattcatgtattctgagtggaaatatgaaataccaaa 24184978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 31603100 - 31603035
Alignment:
Q  82 gtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgaga 147  Q
    |||||||||||||||  | |||||||| ||||| |||| |||||||||| ||||||||||||||||    
T  31603100 gtgaagtttgatattggatcaaatgagattagacaagataatcaaaacacgagaatagttttgaga 31603035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 16918027 - 16918093
Alignment:
Q  77 gagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagtttt 143  Q
    |||||||||| |||||||||  | |||||||  ||||| |||| || ||||||||||||||||||||    
T  16918027 gagatgtgaattttgatattggatcaaatgatattagaaaagataaacaaaacatgagaatagtttt 16918093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 31602965 - 31602924
Alignment:
Q  226 atacattcatgtattgttagaggaaacatgaaataccaaatg 267  Q
    ||||||||||||||| | ||| ||||||||||||||||||||    
T  31602965 atacattcatgtattctaagatgaaacatgaaataccaaatg 31602924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 20487996 - 20487879
Alignment:
Q  45 ttattcaatcatatttcaaata----acgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagt 140  Q
    ||||||||||||||||||||||    || ||| || |||| |||||||||||||||  | |||||||||||| | ||| |||||||||||||| |||| |    
T  20487996 ttattcaatcatatttcaaatatcaaacaaagtaccgagaggtgaagtttgatattggatcaaatgaggttacacaagtcaatcaaaacatgaaaata-t 20487898  T
Q  141 tttgagagtgttgggacaa 159  Q
    ||||||||| |||||||||    
T  20487897 tttgagagtcttgggacaa 20487879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 31139271 - 31139153
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgt 165  Q
    |||||||||| |||| |||||||||||||||  | |||||||| |||||||||| || ||||| ||||||| | ||||| |||| |||||| || || |     
T  31139271 aacgaagaaccgagaggtgaagtttgatattggatcaaatgagattagataagataaacaaaatatgagaacaattttgtgagtcttgggataataaggc 31139172  T
Q  166 tgtacttaaatggtctcaa 184  Q
    || ||||||| ||||||||    
T  31139171 tgcacttaaagggtctcaa 31139153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 265
Target Start/End: Original strand, 8890739 - 8890935
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgt 165  Q
    |||||||||| |||| |||||||||||||||  ||||||| || ||||| |||| || |||||||||| ||||||| |  |||| || |||||| || ||    
T  8890739 aacgaagaaccgagaagtgaagtttgatattggaacaaattagattagacaagataa-caaaacatgataatagttgtatgagtttttggacaataaggt 8890837  T
Q  166 tgtacttaaatggtctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    || ||| ||| || |||||  || ||||||||| ||||||| ||   | ||| ||   ||||||||||||| ||| | |||||||||||||| |||||||    
T  8890838 tgcactcaaagggactcaatgataatcaaccatgagaataggcttagttattgtt--gagatacattcatgaattatgagaggaaacatgaattaccaaa 8890935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 265
Target Start/End: Original strand, 12881607 - 12881804
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgt 165  Q
    |||||||||| |||| |||||||||||||||  | ||| | || ||||  |||| || |||||||||||||||||| || |||| || |||||| ||  |    
T  12881607 aacgaagaaccgagaggtgaagtttgatattggatcaacttagtttaggcaagataaacaaaacatgagaatagttatgtgagtcttaggacaataagat 12881706  T
Q  166 tgtacttaaatggtctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    || ||| ||| ||||| ||  || || |||||  ||||||  || | | ||||||   ||||||||||||||||| | ||||||||||||||||||||||    
T  12881707 tgcactcaaagggtcttaatgataattaaccaaaagaataagcttggttattattg--agatacattcatgtattttgagaggaaacatgaaataccaaa 12881804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 267
Target Start/End: Original strand, 4285096 - 4285301
Alignment:
Q  66 aacgaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgt 165  Q
    ||||||| || ||||||| |||||||||||   | |||||||| ||| |||||  | ||||||||| |||||| |||| ||||| |||| |||| || ||    
T  4285096 aacgaagtaccgagatgtaaagtttgatataggatcaaatgagattaaataaggtattcaaaacatcagaataatttttagagtcttggaacaataaggt 4285195  T
Q  166 tgtacttaaatggtctcaacaattatcaaccattagaatagactcgat----cattatttccagatacattcatgtattgttagaggaaacatgaaatac 261  Q
    |  || |||| | ||||||  || ||||||||| |||||||| | | |     ||| |||  |||||||||||||||||   |||||||||||||||||     
T  4285196 tacacctaaaagatctcaatgataatcaaccatgagaatagatttgcttatatattgttttgagatacattcatgtatttcgagaggaaacatgaaatat 4285295  T
Q  262 caaatg 267  Q
    ||||||    
T  4285296 caaatg 4285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 4853696 - 4853737
Alignment:
Q  224 agatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    ||||||||||||||| | ||| ||||||||||||||||||||    
T  4853696 agatacattcatgtaatcttataggaaacatgaaataccaaa 4853737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 4875430 - 4875471
Alignment:
Q  224 agatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    ||||||||||||||| | ||| ||||||||||||||||||||    
T  4875430 agatacattcatgtaatcttataggaaacatgaaataccaaa 4875471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 11271663 - 11271736
Alignment:
Q  83 tgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttggga 156  Q
    ||||||||||||||  | |||||||| ||||| |||| || ||||| ||||||||| ||||| |||| ||||||    
T  11271663 tgaagtttgatattggatcaaatgagattagacaagataaacaaaatatgagaataattttgtgagtcttggga 11271736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 26266687 - 26266877
Alignment:
Q  69 gaagaactgagatgtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgggacaacaatgttgt 168  Q
    |||| ||||| |||||| ||||||||||  | |||||||| | ||| || | || |||||||| |||||||||||| |||| ||| || || || | ||     
T  26266687 gaaggactgaaatgtgaggtttgatattggatcaaatgagataagacaatataaacaaaacataagaatagttttgtgagtcttgagataataaagatgc 26266786  T
Q  169 acttaaatggtctcaacaattatcaaccattagaatagactcgatcattatttccagatacattcatgtattgttagaggaaacatgaaatac 261  Q
    ||||||| ||||||||  || ||||||||| |||||| ||| ||| ||||||   ||||||||| ||||||| | | ||||||||| ||||||    
T  26266787 acttaaagggtctcaatgataatcaaccatgagaataaacttgattattatt--gagatacatttatgtattctcaaaggaaacataaaatac 26266877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 16766393 - 16766324
Alignment:
Q  85 aagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttgagagtgttgg 154  Q
    |||||||| |||  |||||||||||||||| |||| |||||||| ||||||||| |||||||||| ||||    
T  16766393 aagtttgaaatttgaacaaatgaggttagacaagataatcaaaatatgagaataattttgagagtcttgg 16766324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 31817658 - 31817596
Alignment:
Q  82 gtgaagtttgatattcaaacaaatgaggttagataagacaatcaaaacatgagaatagttttg 144  Q
    |||||||||||||||  |||||||||| ||||| |||| || |||||||||||||||||||||    
T  31817658 gtgaagtttgatattagaacaaatgagattagagaagataagcaaaacatgagaatagttttg 31817596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1485 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1485
Description:

Target: scaffold1485; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 1301 - 1260
Alignment:
Q  224 agatacattcatgtattgttagaggaaacatgaaataccaaa 265  Q
    ||||||||||||||| | ||| ||||||||||||||||||||    
T  1301 agatacattcatgtaatcttataggaaacatgaaataccaaa 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University