View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_3 (Length: 516)
Name: NF5794_high_3
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 32514518 - 32514034
Alignment:
| Q |
18 |
tgtcatacttgctggtcaggagaatatctccctcaatcctattctcgagtaaaaaacatgatcaaagctcagaatctaaacaaatctcaagaagattcta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514518 |
tgtcatacttgctggtcaggagaatatctccctcaatcctattctcgagtaaaaaacatgatcaaagctcagaatctaaacaaatctcaagaagattcta |
32514419 |
T |
|
| Q |
118 |
ttctaagttgttttcatatnnnnnnntgtcatcacaatgatcctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccat |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514418 |
ttctaagttgttttcatataaaaaaatgtcatcacaatgatcctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccat |
32514319 |
T |
|
| Q |
218 |
gctattctgtctcctcaagttaagaatcagaacactaacatgtgctccaacaaacactgcagtgttggcagtggtgtcgcgccttcacagcatagctaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514318 |
gctattctgtctcctcaagttaagaatcagaacactaacatgtgctccaacaaacactgcagtgttggcagtggtgtcgcgccttcacagcatagctaag |
32514219 |
T |
|
| Q |
318 |
gattcacttgagcatggttcatatggtctcggtgacatagttttatttggaaatagtaaaagaatgaaaatagattcttataaggatcttggtgaagtgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514218 |
gattcacttgagcatggttcatatggtctcggtgacatagttttatttggaaatagtaaaagaatgaaaatagattcttataaggatcttggtgaagtgt |
32514119 |
T |
|
| Q |
418 |
ttttggagaatagagttgatgatttgttgcacgctttttctccaatgactggatggataaatagtttggaatcaatgatcaagtt |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32514118 |
ttttggagaatagagttgatgatttgttgcacgctttttctccaatgactggatggataaatagtttggaatcaatgatcaagtt |
32514034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 32542971 - 32543449
Alignment:
| Q |
18 |
tgtcatacttgctggtcaggagaatatctccctcaatcctattctcgagtaaaaaacatgatcaaagctcagaatctaaacaaatctcaagaagattcta |
117 |
Q |
| |
|
||||| ||||||| |||||||| | ||||| || |||| |||| ||||| |||| || ||||||||||| ||||||||| | ||||| ||||| ||| |
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| T |
32542971 |
tgtcagacttgcttgtcaggagtaaatctcggtcgatccaattcccgagtcaaaactataatcaaagctcaaaatctaaacgagtctcagaaagatgcta |
32543070 |
T |
|
| Q |
118 |
ttctaagttgttttcatatnnnnnnntgtcatcacaatgatcctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccat |
217 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
32543071 |
ttctaagttgtcttcatatgaagaagtgtcatcacaatgatcctattaaactcatatggggtccaccaggaactggcaaaacaaaaacagttgcatccat |
32543170 |
T |
|
| Q |
218 |
gctattctgtctcctcaagttaagaatcagaacactaacatgtgctccaacaaacactgcagtgttggcagtggtgtcgcgccttcacagcatagctaag |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32543171 |
gctattttgtctcctcaagttaagaatcagaacactaacatgtgctccaacaaacactgcagtgttggcagtggtgtcgcgccttcacagcatagctaag |
32543270 |
T |
|
| Q |
318 |
gattcacttgagcatggttcatatggtctcggtgacatagttttatttggaaatagtaaaagaatgaaaatagattcttataaggatcttggtgaagtgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
32543271 |
gattcacttgagcatggttcatatggtcttggtgacatactactatttggaaatagtaagagaatgaaaatagaatcttataagggtcttggtgaagtgt |
32543370 |
T |
|
| Q |
418 |
ttttggagaatagagttgatgatttgttgcacgctttttctccaatgactggatggataaatagtttggaatcaatgat |
496 |
Q |
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||||||| ||||||||||||||||||||| || ||||||||||||||| ||||||| |||| |||| ||||||||||| |
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| T |
32543371 |
ttttggataatagagttgatgatttgttgtactgtttttctccaatgacaggatggaaaaattgtttagaatcaatgat |
32543449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 32526006 - 32525937
Alignment:
| Q |
317 |
ggattcacttgagcatggttcatatggtctcggtgacatagttttatttggaaatagtaaaagaatgaaa |
386 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||| || | |||||||||||||| ||||||||| |
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|
| T |
32526006 |
ggattcacttgagcttgaaacatatggtctaggtgacattgtgctctttggaaatagtaagagaatgaaa |
32525937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 32532550 - 32532437
Alignment:
| Q |
165 |
aaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccatgctattctgtctcctcaagttaagaatcagaacactaacatgtgctc |
264 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||| || |||||||| | | || |||| | ||| ||||||||| || ||||||| | || ||||||| |
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| T |
32532550 |
aaacttatatggggaccaccagggacagggaaaactaagacagttgcatgcttgttattttctctactcaagttacaaaccagaacattgacttgtgctc |
32532451 |
T |
|
| Q |
265 |
caacaaacactgca |
278 |
Q |
| |
|
|||| || |||||| |
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|
| T |
32532450 |
caactaatactgca |
32532437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 28857345 - 28857214
Alignment:
| Q |
160 |
ctattaaactcatatggggtccaccaggaacaggcaaaacaaaaacagttgcttccatgctattctgtctcctcaagttaagaatcagaacactaacatg |
259 |
Q |
| |
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|||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||| || |||| | || |||||||| | | ||||||| ||||||| |
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| T |
28857345 |
ctattaaacttatttggggcccaccagggaccggcaaaacaaagacagtggcttccttgttattttccctgctcaagtttaaagccagaacattaacatg |
28857246 |
T |
|
| Q |
260 |
tgctccaacaaacactgcagtgttggcagtgg |
291 |
Q |
| |
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||||||||| || ||||||||||||| ||||| |
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|
| T |
28857245 |
tgctccaactaatactgcagtgttggaagtgg |
28857214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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