View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5794_high_32 (Length: 248)
Name: NF5794_high_32
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_32 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 19394736 - 19394507
Alignment:
| Q |
13 |
gtttcactaacctttactg-caggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
111 |
Q |
| |
|
|||||||||||||| | || ||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
19394736 |
gtttcactaaccttaattggcaggacctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatatataacc |
19394637 |
T |
|
| Q |
112 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394636 |
cgaaagcatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgatt |
19394537 |
T |
|
| Q |
212 |
cttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| |
|
|
| T |
19394536 |
cttttatagagtcttcatcttcattctctg |
19394507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 19465939 - 19465710
Alignment:
| Q |
13 |
gtttcactaacctttactgc-aggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
111 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
19465939 |
gtttcactaaccttaactggtaggagctcaatttctgcgaaagctatttaactttaccgtcaaagtaacatagagcttgtcacctattccatatataaac |
19465840 |
T |
|
| Q |
112 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19465839 |
cgaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccgtccttagatacaatgatt |
19465740 |
T |
|
| Q |
212 |
cttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
||||||| || |||||| | || ||||||| |
|
|
| T |
19465739 |
cttttatcgattcatcatcctcattctctg |
19465710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 19456894 - 19456662
Alignment:
| Q |
1 |
aaactgaaagtagtttcactaacctttactgcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||| |
|
|
| T |
19456894 |
aaactgaaagcagtttcactaacctttactgcaggagttcaatttctgcgaaagctatttaactttaccatcaaagttacatagaccctgttacccactc |
19456795 |
T |
|
| Q |
101 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
200 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| || || |
|
|
| T |
19456794 |
catatataacccaaaagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccaagccgag |
19456695 |
T |
|
| Q |
201 |
atacaatgattcttttatagagtcatcaccttc |
233 |
Q |
| |
|
| ||| ||||||| |||||||||||||| |||| |
|
|
| T |
19456694 |
aaacattgattctcttatagagtcatcatcttc |
19456662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 19382480 - 19382251
Alignment:
| Q |
13 |
gtttcactaacctttactg-caggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
111 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
19382480 |
gtttcactaaccttaactggcagcagctcaatttctgcgaaagctatttaactttaccgtcaaaataacatagagcttgtcacctactccatagataaac |
19382381 |
T |
|
| Q |
112 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||| || | |
|
|
| T |
19382380 |
cgaaagtatgcatgcctccatttcctaataagaaataaagaaccacaaatcccccaaaaacctactccaaatccaactcccatgcctagatacaacgact |
19382281 |
T |
|
| Q |
212 |
cttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|| ||||||| |||||| |||| ||||||| |
|
|
| T |
19382280 |
ctattatagattcatcatcttcattctctg |
19382251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 18872310 - 18872500
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18872310 |
gcaggagctcaatatctgcgaaagctatttaactttatcatcaaagtaacatagagcttgtcacctactccatatataaaccaaaagtatgcatgcctcc |
18872409 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttataga |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||| ||||||| |
|
|
| T |
18872410 |
atttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgccaagatacattgattctcttataga |
18872500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 19352960 - 19352750
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
19352960 |
gcagaagctcatattctacgaaagctatttaactttaccattaaagttacataaagcctgttacccactccatatataaaccgaaaatatgcatgcctcc |
19352861 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
230 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19352860 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactcccatgcctagatacaatgattcttttatggagtcatcacc |
19352761 |
T |
|
| Q |
231 |
ttcgttctctg |
241 |
Q |
| |
|
||| ||||||| |
|
|
| T |
19352760 |
ttcattctctg |
19352750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 18017620 - 18017380
Alignment:
| Q |
2 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
100 |
Q |
| |
|
|||| |||||| |||||||| ||||| | |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| || ||| ||| |||| |
|
|
| T |
18017620 |
aacttaaagtacgttcactaatctttattagcagaagctcaacttctacgaaagctatttaactttaccatcaaagttacataaagtctgttacccactc |
18017521 |
T |
|
| Q |
101 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
18017520 |
catatataaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctgctgcaaagccaactcccatgcctag |
18017421 |
T |
|
| Q |
201 |
atacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
||||||||||||||||||||| |||||| | || ||||||| |
|
|
| T |
18017420 |
atacaatgattcttttatagattcatcatcctcattctctg |
18017380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 17951421 - 17951180
Alignment:
| Q |
2 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||| || |||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||| ||| ||| |||| |
|
|
| T |
17951421 |
aacttaaagtaggttcactaaccttttctagcagaagctcaacttctgcaaaagctatttaactttaccttcaaagttacatagagcctgttacccactc |
17951322 |
T |
|
| Q |
101 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
17951321 |
catatataaaccgaaagtatgcatgcctccattttcgaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaag |
17951222 |
T |
|
| Q |
201 |
atacaatgattcttttatagagtcatcaccttcgttctctgc |
242 |
Q |
| |
|
|||||||||||||||| ||| |||||| | || |||||||| |
|
|
| T |
17951221 |
gtacaatgattcttttagagattcatcatcctcattctctgc |
17951180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 17725989 - 17726176
Alignment:
| Q |
51 |
aaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaa |
150 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17725989 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
17726088 |
T |
|
| Q |
151 |
gaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttct |
238 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
17726089 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattct |
17726176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 19027218 - 19027405
Alignment:
| Q |
51 |
aaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaa |
150 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
19027218 |
aaagctatttaactttacaattaaagtaacatagagcttgtcacctactccatcaataaaccaaaagtatgcatgcctccattttctaataagaaacaaa |
19027317 |
T |
|
| Q |
151 |
gaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttct |
238 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
19027318 |
gaaccacaaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattct |
19027405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 19401324 - 19401083
Alignment:
| Q |
2 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
100 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
19401324 |
aacttaaattaggttcactaacctttactagcaaaagctcaacttctatgaaagctatttaactttaccatcaaagttacatagagcctgttacccactc |
19401225 |
T |
|
| Q |
101 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
19401224 |
catatatgaaccgaaaatatgcatgcctccattttctaatgagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgccaag |
19401125 |
T |
|
| Q |
201 |
atacaatgattcttttatagagtcatcaccttcgttctctgc |
242 |
Q |
| |
|
||||| |||||||||||||| || ||| |||| |||||||| |
|
|
| T |
19401124 |
gtacaacgattcttttatagattcgtcatcttcattctctgc |
19401083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 18110028 - 18109801
Alignment:
| Q |
2 |
aactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactc |
100 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| |||| ||||||| ||| || ||||||||| |||||||||||||| |||||||||||| ||| ||| |||| |
|
|
| T |
18110028 |
aacttaaattaggttcactaacctttactagcagaagctcaacttcagcaaaagctattcaactttaccatcaatgttacatagagcctgttacccactc |
18109929 |
T |
|
| Q |
101 |
catatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctag |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
18109928 |
catatataaaacgaaagtatgcatgcctccatttcctgataacaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccataccaag |
18109829 |
T |
|
| Q |
201 |
atacaatgattcttttatagagtcatca |
228 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
18109828 |
gtacaatgattcttttatagattcatca |
18109801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 17943517 - 17943312
Alignment:
| Q |
36 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
135 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| || |||| || |||||||||||| |||||||||||||||| |
|
|
| T |
17943517 |
agctcagtttctgcgaaagctatttaactttacgatcaaagtaacatagagtttgtcgcccactctatcaataaaccgaaagcatgcatgcctccatttt |
17943418 |
T |
|
| Q |
136 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgt |
235 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||| || || |||| |||||||||||||||||||||| |||| | |
|
|
| T |
17943417 |
ctaataaaaaacaaagaaccacaaatcccccaaaaacctgctgcaaatccaacccccatgccaaggtacagtgattcttttatagagtcatcatcttcat |
17943318 |
T |
|
| Q |
236 |
tctctg |
241 |
Q |
| |
|
|||||| |
|
|
| T |
17943317 |
tctctg |
17943312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 18166743 - 18166517
Alignment:
| Q |
13 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
111 |
Q |
| |
|
|||||||||||||| || ||| || |||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||| || |||||| |
|
|
| T |
18166743 |
gtttcactaaccttaaccagcatgaactcagtttctgagaaagctatttaactttacgttcaaagtaacatagagcttgtcaccaactctatcaataaac |
18166644 |
T |
|
| Q |
112 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
211 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
18166643 |
cgaaagtatgcatgtctccattttctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatccaactcccatgcctaggtacaaccatt |
18166544 |
T |
|
| Q |
212 |
cttttatagagtcatcaccttcgttct |
238 |
Q |
| |
|
|| |||||||||||||| |||| |||| |
|
|
| T |
18166543 |
ctcttatagagtcatcatcttcattct |
18166517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 42 - 227
Target Start/End: Complemental strand, 25464610 - 25464425
Alignment:
| Q |
42 |
atttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatg |
141 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25464610 |
atttctgcgaaagtggtttaactttacgatcaaagtaacatagagtttgtcactcactccattaataaaccgaaagtatgcatgcctccatttcctaata |
25464511 |
T |
|
| Q |
142 |
agaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatc |
227 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25464510 |
aaaaacaaagaaccacaaatcccccagaaacctattgcaaatccaactcccaagcctagatacaatgattcttttatagagtcatc |
25464425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 19377187 - 19377000
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
19377187 |
gcaggagcttaatttctttgaaacctgtttaactttacgatcaaagtaacatagagtttgtcacctactctattaataaactgaaagtatgcatgcctcc |
19377088 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttat |
218 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
19377087 |
atttcctaataagaaacaaagaaccgcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctcttat |
19377000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 19335580 - 19335378
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||| |||||||| ||||||| ||||||||| |||| ||| | |||||||||||| |||||||||| |
|
|
| T |
19335580 |
gcaggagctcaatttcttttaaacatgttcaactttacgatcaaagtaacatagatcttgtcacccactctataaacaaaccgaaagtaagcatgcctcc |
19335481 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
230 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| ||| | |
|
|
| T |
19335480 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctgctgcaaatccaactctcatccctagatacaatgattctcttaaagagtcgtcatc |
19335381 |
T |
|
| Q |
231 |
ttc |
233 |
Q |
| |
|
||| |
|
|
| T |
19335380 |
ttc |
19335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 14894807 - 14895015
Alignment:
| Q |
17 |
cactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaa |
115 |
Q |
| |
|
|||||||||| ||| || |||||||||||| | | |||| | ||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14894807 |
cactaaccttaactagccggagctcaattttttccaaagttgtttaactttgggatcaaagtaacatagagcttgtcacctactccatcaataaaccgaa |
14894906 |
T |
|
| Q |
116 |
agtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttt |
215 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||| |||||||||||| |||||| || ||||||| ||||||| | |
|
|
| T |
14894907 |
agtatgcatgcctccattttctaataagaaacaaagaaccagaaatcccccaaaaacctactgcaaatccaattcccatgccaagatacattgattctct |
14895006 |
T |
|
| Q |
216 |
tatagagtc |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
14895007 |
tatagagtc |
14895015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 18117517 - 18117314
Alignment:
| Q |
38 |
ctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcct |
137 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||| |||||||| | |||||| |||| || | ||||||||||| ||||||||||||||||| |
|
|
| T |
18117517 |
ctcagtttcagcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctatcaactaaccgaaagtacgcatgcctccatttcct |
18117418 |
T |
|
| Q |
138 |
aatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttc |
237 |
Q |
| |
|
||| ||||||| |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||| ||||||| |||||| |||| ||| |
|
|
| T |
18117417 |
aataagaaacatagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctagatacaatgactctcttatagattcatcatcttcattc |
18117318 |
T |
|
| Q |
238 |
tctg |
241 |
Q |
| |
|
|||| |
|
|
| T |
18117317 |
tctg |
18117314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 18148405 - 18148175
Alignment:
| Q |
13 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
111 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| ||| ||||||||||||||||||||| |||| ||| |||||||| | |||||| |||| || | ||| |
|
|
| T |
18148405 |
gtttaactaaccttaactagcaggagctcagcttcggcgaaagctatttaactttacgatcacagtaacatagagatagtcacccactctatcaactaac |
18148306 |
T |
|
| Q |
112 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| || | |
|
|
| T |
18148305 |
cgaaagtacgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccagaaacctactgcaaatcccactcccatgcctaaatacaacgact |
18148206 |
T |
|
| Q |
212 |
cttttatagagtcatcaccttcgttctctgc |
242 |
Q |
| |
|
|| ||||||| |||||| |||| |||||||| |
|
|
| T |
18148205 |
ctcttatagattcatcatcttcattctctgc |
18148175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 19426231 - 19426051
Alignment:
| Q |
58 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
157 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||| |||| |||| || | ||||||||||||||||||| ||||||| ||||| || ||||||||||||| |
|
|
| T |
19426231 |
tttaactttacgatcaaagtaacatagatcttatcacgcactctatcaacaaaccgaaagtatgcatgcttccattttctaataaggaacaaagaaccac |
19426132 |
T |
|
| Q |
158 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttct |
238 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
19426131 |
aaatcccccagaaacctactgcaaatccaactcccatccctagatacaatgattctttgatagagtcatcatcttcattct |
19426051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 19355283 - 19355081
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| |||||||| ||||||| |||||||| |||| || | ||||||||||||||||||||||| |
|
|
| T |
19355283 |
gcaggagctcaatttcttttaaacccgtttaactttacgatcaaagtaacatagatcttgtcacgcactctatcaacaaaccgaaagtatgcatgcctcc |
19355184 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
230 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||| | |
|
|
| T |
19355183 |
attttctaattagaaacaaagaacggcaaatcccccagaaacctactgcaaatccaactcccatgcctagatacaatgattctttgatagagtcgtcatc |
19355084 |
T |
|
| Q |
231 |
ttc |
233 |
Q |
| |
|
||| |
|
|
| T |
19355083 |
ttc |
19355081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 19462767 - 19462538
Alignment:
| Q |
13 |
gtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaac |
111 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||| |||| || | ||| |
|
|
| T |
19462767 |
gtttaactaaccttaactagcaggagctcagtttctgcgaaagctatttaactttacggtcaaagtaacatagagaaagtcacccactctatcaactaac |
19462668 |
T |
|
| Q |
112 |
cgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgatt |
211 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |||||| |||||||||| |||||||| |||| |||||| || | |
|
|
| T |
19462667 |
cgaaagtacgcatgcctccatttccgaataagaaacaaagaaccacaaatgccccagaaacctactgcaaatcccactcccatgcctaaatacaacgact |
19462568 |
T |
|
| Q |
212 |
cttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|| ||||||| |||||| |||| ||||||| |
|
|
| T |
19462567 |
ctcttatagattcatcatcttcattctctg |
19462538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 242
Target Start/End: Complemental strand, 19438497 - 19438303
Alignment:
| Q |
48 |
gcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaac |
147 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || | ||||| ||| || | ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
19438497 |
gcgaaagctatttaactttactatcaaagtaacataaagatagtcacacactgtatcaactaaccgaaagtacgcatgcctccatttcctaataagaaac |
19438398 |
T |
|
| Q |
148 |
aaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttctctgc |
242 |
Q |
| |
|
| |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||| ||||||| |||||| |||| |||||||| |
|
|
| T |
19438397 |
atagaaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaacgactctcttatagattcatcatcttcattctctgc |
19438303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 18105078 - 18104853
Alignment:
| Q |
18 |
actaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaa |
116 |
Q |
| |
|
||||||||| ||| ||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||| | |||||| |||| || | |||||||| |
|
|
| T |
18105078 |
actaaccttaactagcaggagctcagtttcggcgaaagctatttaactttacgatcaaagtaacatagagatagtcacccactctattaactaaccgaaa |
18104979 |
T |
|
| Q |
117 |
gtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattctttt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||||||| | || ||| |||||||||| |||||||| |||| |||||| || ||| || |
|
|
| T |
18104978 |
gtatgcatgcctccatttcctaataagaaacatagaaccgaaaatccccaagaatcctactgcaaatcccactcccatgcctaaatacaacgactctctt |
18104879 |
T |
|
| Q |
217 |
atagagtcatcaccttcgttctctgc |
242 |
Q |
| |
|
||||| |||||| ||| |||||||| |
|
|
| T |
18104878 |
atagattcatcattttcattctctgc |
18104853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 217
Target Start/End: Complemental strand, 16678773 - 16678589
Alignment:
| Q |
33 |
aggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccat |
132 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||||| || |||||| ||||||||| |
|
|
| T |
16678773 |
aggaactcaacttctgtgaaagttatttaactttaccatcaaagttacatacagcttgtcgcccactccatcaataaattgatagtatgtgtgcctccat |
16678674 |
T |
|
| Q |
133 |
ttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattctttta |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||| | ||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
16678673 |
ttcctaataagaaacaaagaaccacaaataccccagaaacctaccgcaaaaccaactcccaagcccagatacaatgattctttta |
16678589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 19415747 - 19415557
Alignment:
| Q |
36 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
135 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||| |||||||| ||| | | |||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
19415747 |
agctcagtttctgcgaaagctatttaactttacgaccaaagtaacatagagattgccggccactctatcaataaaccggaagtatgcatgcctgcatttt |
19415648 |
T |
|
| Q |
136 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcat |
226 |
Q |
| |
|
||||| ||||| | |||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||| ||||| |||| |
|
|
| T |
19415647 |
ctaataagaaaaatagaaccacaaatcccccagaaacctactgcaaatcccactcccattcctagatacaatgaatctttcatagaatcat |
19415557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 24493200 - 24493377
Alignment:
| Q |
18 |
actaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaa |
116 |
Q |
| |
|
||||||||| ||| |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||| | ||||||| ||||||| |||||||| | |
|
|
| T |
24493200 |
actaaccttaactagcaggaactcattttctgtgaaagctat--aacttcaccatcaaagttacatagatcctgtcacccactccatcgataaaccggta |
24493297 |
T |
|
| Q |
117 |
gtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatcc |
196 |
Q |
| |
|
||| || ||||||||||||||||| ||||| |||| |||||| ||| ||| |||||| || |||| ||||||||||||| |
|
|
| T |
24493298 |
gtacgcgtgcctccatttcctaataagaaataaaggaccacacatcaaccaaaaacctactccaaacccaactcccatcc |
24493377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 24496662 - 24496823
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||| ||| |||||| || |||||| ||||| || |
|
|
| T |
24496662 |
gcaggagctcaattttagtgaaaattatttaaatttaccatcaaagttacatagagcttgt---------catcgataaactgatagtatgtatgcc-cc |
24496751 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagat |
202 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||| ||| |||||| | |||||||||||||||| ||||||| |
|
|
| T |
24496752 |
atttcctaatacgaaacaaaggaccacagatcaaccagaaacctattccaaatccaactcccatgcctagat |
24496823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8461165 - 8460924
Alignment:
| Q |
1 |
aaactgaaagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctact |
99 |
Q |
| |
|
||||| ||||||| ||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||||| | | |
|
|
| T |
8461165 |
aaacttaaagtaggttcactaacctttgctagcaggagctcaatttctgcgaaatctaattaactttaccatcaaaattccatagagcttgtcacccatt |
8461066 |
T |
|
| Q |
100 |
ccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatcccta |
199 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| || | |
|
|
| T |
8461065 |
ccatcaataaatcgatagtatgcatgcctccatttcctaataagaaacaaagaaccacaaatcccccaaaaacccactgcaaatccaactcccatgccaa |
8460966 |
T |
|
| Q |
200 |
gatacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
8460965 |
gatacaatgattctcttatagagtcatcatcttcattctctg |
8460924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 241
Target Start/End: Complemental strand, 15537101 - 15536891
Alignment:
| Q |
31 |
gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctcc |
130 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||| |||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
15537101 |
gcaggagctcaatttctgtgaaacatgtttaactttacgatcaaagtaacatagatcttgtcacctactttatcagtaaaccgaaagtatgcatgcctcc |
15537002 |
T |
|
| Q |
131 |
atttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcacc |
230 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
15537001 |
attttctaataagaaacaaagaaccacaaatcccccagaaacctaccgcaaatccaactcccatccctagatacaatgattctttgttagagtcatcatc |
15536902 |
T |
|
| Q |
231 |
ttcgttctctg |
241 |
Q |
| |
|
||| ||||||| |
|
|
| T |
15536901 |
ttcattctctg |
15536891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 2708981 - 2709195
Alignment:
| Q |
8 |
aagtagtttcactaacctttact-gcaggagctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatata |
106 |
Q |
| |
|
|||||| |||||||||||| ||| | || ||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2708981 |
aagtaggttcactaaccttaacttgtagaagctcgatttctatgaaagttgtttaactttatcatcaaagttacatagagcttgtcacctactccatcaa |
2709080 |
T |
|
| Q |
107 |
taaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaa |
206 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
2709081 |
taaaccgatagtatgtgttcctccatttcctaataagaaacaaaggaccacaaatcccccaaaaacctactgcaaatccaactcccatgcctagatacaa |
2709180 |
T |
|
| Q |
207 |
tgattcttttataga |
221 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
2709181 |
tgattctcttataga |
2709195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 13665385 - 13665587
Alignment:
| Q |
36 |
agctcaatttctgcgaaagctatttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttc |
135 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| | |||||| ||||| || |||| || | |||||||||| |||||||||||||||| |
|
|
| T |
13665385 |
agctcagttcctgcgaaagctatttaactttaccatcaaagtaatatagagattgtcgcccactctatcaaaaaaccgaaagcatgcatgcctccatttt |
13665484 |
T |
|
| Q |
136 |
ctaatgagaaacaaagaaccacaaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgt |
235 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || || | ||||||||||||||||||||| ||| |||| | |
|
|
| T |
13665485 |
ctaataagaaacaaagaaccacatatcccccagaaacctgctgcaaatccaacccccatgccaaggttcaatgattcttttatagagtcgtcatcttcat |
13665584 |
T |
|
| Q |
236 |
tct |
238 |
Q |
| |
|
||| |
|
|
| T |
13665585 |
tct |
13665587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 22127 - 21944
Alignment:
| Q |
58 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
157 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22127 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
22028 |
T |
|
| Q |
158 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
22027 |
aaatcccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctg |
21944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 2029 - 2212
Alignment:
| Q |
58 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
157 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2029 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
2128 |
T |
|
| Q |
158 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
2129 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctg |
2212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 2558 - 2742
Alignment:
| Q |
58 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
157 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2558 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccaa |
2657 |
T |
|
| Q |
158 |
aaat-cccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
2658 |
aaatacccccagaaaccaactgcaaatccaacccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctg |
2742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 6944 - 6761
Alignment:
| Q |
58 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
157 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6944 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
6845 |
T |
|
| Q |
158 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
6844 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctg |
6761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 12042 - 11859
Alignment:
| Q |
58 |
tttaactttaccatcaaagttacatagagcttgtcacctactccatatataaaccgaaagtatgcatgcctccatttcctaatgagaaacaaagaaccac |
157 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12042 |
tttaactttacaatcgaagtaacatagagcttgtcacccactctatcaataaaccgatagtatgcatgcctccattttgtaatgagaaacaaagaaccga |
11943 |
T |
|
| Q |
158 |
aaatcccccataaacctgctgcaaatccaactcccatccctagatacaatgattcttttatagagtcatcaccttcgttctctg |
241 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||||| || ||||||||||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
11942 |
aaatcccccagaaaccaactgcaaatccaatccccatgccaagatacaatgactcttttgcagagtcatcatcttcattctctg |
11859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University