View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_4 (Length: 509)
Name: NF5794_high_4
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 215 - 477
Target Start/End: Original strand, 46079733 - 46079995
Alignment:
| Q |
215 |
ttattttatttccgagaataatataacttttttcaaactctataaaatatattttagaagcgttagattaagtacccctacatgatattattaagtgagg |
314 |
Q |
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| T |
46079733 |
ttattttatttccgagaataatataacttttttcaaactctataaaatatattttagaagcgttagattaagtacccctacatgatattattaagtgagg |
46079832 |
T |
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| Q |
315 |
attgcctttactaacgtctgtatttagaatatttgaagcatgactcaaatgacccnnnnnnngatgatcacatgacatgtggttaaatggatttttatag |
414 |
Q |
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| T |
46079833 |
attgcctttactaacgtctgtatttagaatatttgaagcatgactcaaatgacccaaaaaaagatgatcacatgacacgtggttaaatggatttttatag |
46079932 |
T |
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| Q |
415 |
actataataaatatcatactagaatttgagttgagtctgacttaatctttataaactcatatg |
477 |
Q |
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| T |
46079933 |
attataataaatatcatactaaaatttgagttgagtctgacttaatctttataaactcatatg |
46079995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 46079538 - 46079712
Alignment:
| Q |
17 |
attattagatgcagtcttttgagtttttagtctaaggaataatttttcgagaaataataatagaaattttattccctaatgtgcgtttggttaatactaa |
116 |
Q |
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| T |
46079538 |
attattagatgcagtcttttgagtttttagtctaaggaataatttttcgagaaataataatagaaattttattccctaatgtgcgtttggttaatactaa |
46079637 |
T |
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| Q |
117 |
tcacattcatgagaattggatagttatctaaattttatttcatctctatt----aatatttttaccacccatttt |
187 |
Q |
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| T |
46079638 |
tcacattcatgagaattggatagttatctaaattttatatcatctctattcgacaatatttttaccacccatttt |
46079712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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