View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5794_high_42 (Length: 230)
Name: NF5794_high_42
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32265688 - 32265826
Alignment:
| Q |
1 |
tcaagatattcatcaatgtacctcaatagaagaagatgcttcaaaaaatgatgtaaaagtaaaaaccaagataacccattaagccatttcccttattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32265688 |
tcaagatattcatcaatgtacctcaatagaagaagatgcttcaaaaaatgatgtaaaagtaaaaaccaagataacccattaagccatttcccttattcat |
32265787 |
T |
|
| Q |
101 |
caacaggagcaggtagattgagatcaatcaaacaaggaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32265788 |
caacaggagcaggtagattgagatcaatcaaacaaggaa |
32265826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 32265846 - 32265908
Alignment:
| Q |
168 |
ttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcc |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32265846 |
ttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcc |
32265908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University