View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_44 (Length: 222)
Name: NF5794_high_44
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29824852 - 29824631
Alignment:
| Q |
1 |
caggttgaggactgagaaaaagatttaatgcccctcatcccacactttctggtccaacgtaataaaagctacttcacgacaagctcgaattctgagttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29824852 |
caggttgaggactgagaaaaagatttaatgcccctcatctcacactttctggtccaacgtaataaaagctacttcacgacaagctcgaattctgagttgg |
29824753 |
T |
|
| Q |
101 |
tcgattagtagcttgagctacactcttcgcaaaataaaagattccgactgaattgtgacatgatttgatagcgtatccaaaacatcacatgaattgtaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29824752 |
tcgattagtagcttgagctacactcttcgcaaaataaaagattccgactgaattgtgacatgatttgatagcgtatccaaaacatcacatgaattgtaac |
29824653 |
T |
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| Q |
201 |
gtgcttgaaggattaaagacac |
222 |
Q |
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|||||||||| ||| ||||||| |
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| T |
29824652 |
gtgcttgaagaattcaagacac |
29824631 |
T |
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