View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_high_6 (Length: 467)
Name: NF5794_high_6
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_high_6 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 4077 - 4525
Alignment:
| Q |
19 |
catctgaaaatcctgagatgtccaagtctgatgatagctttatgggaagacaatagtccaagctggaccttttctctaataagatggaaatttataaaga |
118 |
Q |
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| T |
4077 |
catctgaaaatcctgagatgtccaagtctgatgatagctttatgggaagacaatagtccaagctggaccttttctataataagatggaaatttataaaga |
4176 |
T |
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| Q |
119 |
catgcttggatctttcatgaaatgtgggattgtgagctaagtagatggaggcggggttgtcaaaagtaatgcagaaatcttcaaacacnnnnnnnctgta |
218 |
Q |
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| T |
4177 |
catgcttggatctttcatgaaatgtgggattgtgagctaagtagatggaggcgggtttgtcaaaagtaatgcagaaatcttcaaacagaaaaaaactgta |
4276 |
T |
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| Q |
219 |
atcttctgatggcggcctggtagtgaatgaacttgttggttgaggtttggagacatgttgactcaattgtcggatggtgaaagagataactgaccaggta |
318 |
Q |
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| T |
4277 |
atcttctgatggtggcctggtagtgaatgaacttgttggttgaggtttggagacatgttgactcaattgtcggatggtgaaagagataactgaccaggta |
4376 |
T |
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| Q |
319 |
gtaggttaagtatacaattcatctacacttggattcatgatcatcaaatacaaatcatgtttcaactcaacccactgccgaaccgattctttgtcaatct |
418 |
Q |
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| T |
4377 |
gtaggttaagtatacaattcatctacacttggattcatgatcatcaaatacaaatcatgtttcaactcaacccactgccgaaccggttctttgtcaatct |
4476 |
T |
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| Q |
419 |
gcatccattgtaggctaggacatatttctaattaagattctacctcctc |
467 |
Q |
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| T |
4477 |
gcatccattgtaggctaggacatatttctaattaagattctacctcctc |
4525 |
T |
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