View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_10 (Length: 414)
Name: NF5794_low_10
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 25002972 - 25003353
Alignment:
| Q |
13 |
aatatcacacaagaacgtaaaatatcacacaagaaaattttagtagcatgaaaaaccttctcaattttctcaatgttaataaggaaaaaccacgggattt |
112 |
Q |
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| T |
25002972 |
aatatcacacaagaacgtaaaatatcacacaagaaaattttagtagcatggaaaaccttctcaatcttctcaatgtgaataaggaaaaaccacgggattt |
25003071 |
T |
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| Q |
113 |
gtggaccctgttgaactccactgtaataatgaccggagatacaaatttttacctttaagtagacctaactatgtatctta-tttgtagatacaattctta |
211 |
Q |
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| T |
25003072 |
gtggaccctcttgaactccactgtaataatgactggagatacaaatttttacctt-----agatcaaactatgtatcttaatttgtagatacaattctta |
25003166 |
T |
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| Q |
212 |
caaattatttcattatannnnnnnnn-ctttctcaaaacactaattttctcgtaactctcttgtgaggaactccaatttttctctcaactctgagattat |
310 |
Q |
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| T |
25003167 |
caaattacttcattatattttttttttctttctcaaaacactatttttctcgtaactctcttgtgaggaactccaatttttctctcaactctgagattat |
25003266 |
T |
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| Q |
311 |
gttgtgcttcgttactttgattaggtttgttgaaaccaagtgcattaagtgtatggttctcattttccaacttaggctatcaattgc |
397 |
Q |
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| T |
25003267 |
gttgttcttcgttactttgattaggtttgttgaaaccaagtgcattaagtgtatggttctcattttcctacttaggctatcaattgc |
25003353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Original strand, 1104789 - 1104828
Alignment:
| Q |
340 |
ttgaaaccaagtgcattaagtgtatggttctcattttcca |
379 |
Q |
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| T |
1104789 |
ttgaaaccaagtgcattaaatgtatggttctcattttcca |
1104828 |
T |
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