View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_12 (Length: 380)
Name: NF5794_low_12
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 54081512 - 54081795
Alignment:
| Q |
18 |
gaaatgcatgaattgactaatatataaataattaatatggttgacacaaataaaagaaaatataaggagcagctagtgtgaatgaaataatgaacacgtt |
117 |
Q |
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| T |
54081512 |
gaaatgcatgaattgactaatatataaataactaatatggttgacacaaataaaagaaaatataagtagcagctggtgtgaatgaaataatgaacacgtt |
54081611 |
T |
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| Q |
118 |
agatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttcttgttatgaaaatttcc |
217 |
Q |
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| T |
54081612 |
agatggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtcttcttgttatgaaaatttcc |
54081711 |
T |
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| Q |
218 |
aatatatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttgaattcag |
305 |
Q |
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| T |
54081712 |
a----atatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttgaattcag |
54081795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 120 - 305
Target Start/End: Original strand, 54085019 - 54085203
Alignment:
| Q |
120 |
atggttgattccatgcatcatgtgtgttttagtgaagaaaaattagttgtgtttcaatttcaaccttttgttttagtc--ttcttgttatga----aaat |
213 |
Q |
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| T |
54085019 |
atggttgatgccatgcatcatgtgtgttttagt-aataaaaatcagttgtgtttcaa-ttcaacc-tttgttttagtcttttcctgttatgattccaaat |
54085115 |
T |
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| Q |
214 |
ttccaatatatatctacttgtaatttggcatagctttaactttttgagttgtagatgatggcactgttgtattgtaccatggttgaattcag |
305 |
Q |
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| T |
54085116 |
ttcca----atatctacttgtaatttggcatagctttagttttttgagtcgtagatgatggcaatgtaatgatgtatcatggctgaattcag |
54085203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 331 - 370
Target Start/End: Original strand, 54081819 - 54081858
Alignment:
| Q |
331 |
caagtattgattaatttccactcaaaattgccgtgttctt |
370 |
Q |
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| T |
54081819 |
caagtattgattaatttccactcaaaattgccgtgttctt |
54081858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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