View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_13 (Length: 367)
Name: NF5794_low_13
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_13 |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 56 - 367
Target Start/End: Original strand, 3950624 - 3950935
Alignment:
| Q |
56 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttccagcatgtg |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950624 |
aattttatcaaaaaacttaaaggaaagtgcatgtcacatgttcatacaaattttgtttttgttgatgatacacgattcatacagatatttccagcatgtg |
3950723 |
T |
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| Q |
156 |
tactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgaaattaatatttgtctaatatacaaatccaatgctttgctggaggg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3950724 |
tactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgagattaatatttgtctaatatacaaatccaatgctttgctggaggg |
3950823 |
T |
|
| Q |
256 |
tgaatgtgtatgagttggagagaaaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcaga |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3950824 |
tgaatgtgtatgagttggagagaaaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaaacattgaaggtcaga |
3950923 |
T |
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| Q |
356 |
aattgctttctt |
367 |
Q |
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|||||||||||| |
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| T |
3950924 |
aattgctttctt |
3950935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 4216023 - 4215953
Alignment:
| Q |
279 |
aaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaag |
349 |
Q |
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| T |
4216023 |
aaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatctctagcggccaaagcattgaag |
4215953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 3796899 - 3796829
Alignment:
| Q |
279 |
aaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaag |
349 |
Q |
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| T |
3796899 |
aaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatcactagcggccaaagcattgaag |
3796829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 4014408 - 4014324
Alignment:
| Q |
279 |
aaggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt |
363 |
Q |
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| T |
4014408 |
aaggtcaatgacattacttctttcatatgagagaaacttgaatcagatctatagcagctaaagcattgaaggtttgaaattgctt |
4014324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 3950375 - 3950422
Alignment:
| Q |
15 |
atgtttagtacaaaaatgacgttttgagtcaagttataattaatttta |
62 |
Q |
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| T |
3950375 |
atgtttagtacaaaaatgacgttttgagtcaagttataattaatttta |
3950422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 4027999 - 4027943
Alignment:
| Q |
311 |
gaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttctt |
367 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
4027999 |
gaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttctt |
4027943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
| Q |
303 |
atatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt |
363 |
Q |
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||||| |||||||||||| ||||||||||||||||||| |||||||||| || |||||||| |
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| T |
3961099 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
3961159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 266
Target Start/End: Complemental strand, 4028182 - 4028044
Alignment:
| Q |
131 |
ttcatacagatatttccagcatgtgtactgtttggcaagtcaacttttgcccctgctattttatacctgaataatgatgaaattaatatttgt---ctaa |
227 |
Q |
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|||||||||||| ||||||||||| | |||| |||| ||||| |||||||||||||||||||| | ||||||| ||| |||||||||| | ||| |
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| T |
4028182 |
ttcatacagataattccagcatgtaaattgttaagcaactcaacgtttgcccctgctattttatatttaaataatggtgacattaatatttttttaataa |
4028083 |
T |
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| Q |
228 |
tatacaaatccaatgctttgctggagggtgaatgtgtat |
266 |
Q |
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| T |
4028082 |
tatacagatctaatgctctgtgggagtgtgaatgtgtat |
4028044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 4221287 - 4221238
Alignment:
| Q |
314 |
agttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt |
363 |
Q |
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||||||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
4221287 |
agttgaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt |
4221238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 3822754 - 3822703
Alignment:
| Q |
314 |
agttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttc |
365 |
Q |
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| T |
3822754 |
agttgaatcagatctctagcaaacaaagcatttaaggtcagtaatttctttc |
3822703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 3796952 - 3796915
Alignment:
| Q |
234 |
aatccaatgctttgctggagggtgaatgtgtatgagtt |
271 |
Q |
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| T |
3796952 |
aatccaatgctttgcaggaaggtgaatgtgtatgagtt |
3796915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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