View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_16 (Length: 331)
Name: NF5794_low_16
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 38875289 - 38875595
Alignment:
| Q |
11 |
atcatcatctcttgaatttaaatcaaaacaaacaaaataataggacaatttggatgtatgacccacctcatcacacggtccattatcattacaatcatat |
110 |
Q |
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| T |
38875289 |
atcatcatctcttgaatttaaatcaaaacaaacaaaataataggataatttggatgtatgacacacctcatcacacggtccattatcattacaatcatat |
38875388 |
T |
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| Q |
111 |
ggagcactgcttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattcacaactcataagaaggcaaata |
210 |
Q |
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| T |
38875389 |
ggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattcacaactcataagaaggcaaata |
38875488 |
T |
|
| Q |
211 |
gaaagtagcaactaatactactcaactgcaaattttcctttcaccattttaacatagtttttatttaactaaatcatataaaatgaaatagccttagaac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38875489 |
gaaagtagcaactaatactactcaactgcaaattttcctttcaccattttaacatagtttttatttaactaaatcatat-aaatgaaatagccttagaac |
38875587 |
T |
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| Q |
311 |
atccaagt |
318 |
Q |
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|||||||| |
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| T |
38875588 |
atccaagt |
38875595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 9821038 - 9821232
Alignment:
| Q |
11 |
atcatcatctcttgaatttaaatcaaaacaaacaaaataataggacaatttggatgtatgacccacctcatcacacggtccattatcattacaatcatat |
110 |
Q |
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| T |
9821038 |
atcattatctcttcaactcaaatcaaaacaagcaaaataatatgatagttcaaatgtaggacgca-ctcatcacacggcccgttatcattacaatcatat |
9821136 |
T |
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| Q |
111 |
ggagcactgcttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataagaag |
203 |
Q |
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| T |
9821137 |
ggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataagaag |
9821232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 38693787 - 38693715
Alignment:
| Q |
11 |
atcatcatctcttgaatttaaatcaaaacaaacaaaataataggacaatttggatgtatgacccacctcatca |
83 |
Q |
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||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
38693787 |
atcatcatctcttcaatttaaattaaaacaagcaaaataatacgacaatttggatgtatgacccacctcatca |
38693715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 38693718 - 38693615
Alignment:
| Q |
104 |
atcatatggagcactgcttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
200 |
Q |
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|||||||| |||||||||||| |||||| ||||||||| |||||||||||||||| ||||||| |||| ||| | ||||| ||| ||||||||||| |
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| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
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| Q |
201 |
aagg |
204 |
Q |
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|||| |
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| T |
38693618 |
aagg |
38693615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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