View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_17 (Length: 322)
Name: NF5794_low_17
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 41297232 - 41296967
Alignment:
| Q |
8 |
cgaagaatatcagaaataaatgagaacataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttcccatttgtagcttaca |
107 |
Q |
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| T |
41297232 |
cgaagaataccagaaataaatgagaacataagataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttaca |
41297133 |
T |
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| Q |
108 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttt |
207 |
Q |
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| T |
41297132 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttt |
41297033 |
T |
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| Q |
208 |
taaatgtaaccctgaaaattaagcatcaaaattaaggattcaacacttcattttggtagataatga |
273 |
Q |
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| T |
41297032 |
taaatgtaaccctgaaaattaagcatcaaaattaaggattcaacacttcattttggtagataatga |
41296967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 41307094 - 41306873
Alignment:
| Q |
8 |
cgaagaatatcagaaataaatgagaacataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttcccatttgtagcttaca |
107 |
Q |
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| T |
41307094 |
cgaagaataccagaagtatataagaacataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttcccatttgtagcttaca |
41306995 |
T |
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| Q |
108 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttt |
207 |
Q |
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| T |
41306994 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctcggtgcttttcttccttattactcttt |
41306895 |
T |
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| Q |
208 |
taaatgtaaccctgaaaattaa |
229 |
Q |
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| T |
41306894 |
taaatgtaaccctgaaaattaa |
41306873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 41296959 - 41296923
Alignment:
| Q |
268 |
taatgaattgattatgatatgttactcacattggcgc |
304 |
Q |
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| T |
41296959 |
taatgaattgattatgatatgttactcacattggcgc |
41296923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 9612061 - 9612269
Alignment:
| Q |
9 |
gaagaatatcagaaataaatgagaacataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttcccatttgtagcttacaa |
108 |
Q |
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|||||||| || ||||||||||||||||| | || ||| | | ||||||||||||||||||| || |||||||||||||||||||| |||| ||||||| |
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| T |
9612061 |
gaagaataccaaaaataaatgagaacataagctagctccaaaacaattccaactccattaacagtgacaagaggaaaattttcccacttgttacttacaa |
9612160 |
T |
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| Q |
109 |
taggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactctttt |
208 |
Q |
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|||| || |||||||| |||||||| ||||| ||||| | ||| || |||||||||| |||||||||||||| |||||||| |||||||| || ||||| |
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| T |
9612161 |
taggcaatccataccaagtgaaaaggagacagttcaatagtcctatagtgtaaggaatacatgaaaattcctcagtgctttttttccttatcaccctttt |
9612260 |
T |
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| Q |
209 |
aaatgtaac |
217 |
Q |
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|| ||||| |
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| T |
9612261 |
gaaagtaac |
9612269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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