View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_low_20 (Length: 313)

Name: NF5794_low_20
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_low_20
NF5794_low_20
[»] chr5 (18 HSPs)
chr5 (168-291)||(15160366-15160489)
chr5 (175-291)||(19615030-19615146)
chr5 (168-291)||(30655174-30655297)
chr5 (173-292)||(14416665-14416784)
chr5 (175-284)||(4376574-4376683)
chr5 (184-248)||(1503548-1503612)
chr5 (181-272)||(17012352-17012443)
chr5 (181-283)||(11507337-11507438)
chr5 (181-283)||(11514709-11514810)
chr5 (181-283)||(11522110-11522211)
chr5 (181-283)||(11529523-11529624)
chr5 (181-283)||(11499950-11500051)
chr5 (181-271)||(11536928-11537016)
chr5 (181-283)||(11543016-11543116)
chr5 (181-285)||(17037535-17037639)
chr5 (182-285)||(9333565-9333668)
chr5 (182-285)||(9354393-9354496)
chr5 (181-281)||(31068971-31069070)
[»] chr6 (15 HSPs)
chr6 (168-291)||(6346856-6346979)
chr6 (175-291)||(7601332-7601448)
chr6 (175-291)||(14003859-14003975)
chr6 (168-291)||(2671034-2671157)
chr6 (168-297)||(7913394-7913523)
chr6 (185-286)||(2668456-2668557)
chr6 (200-293)||(2567452-2567545)
chr6 (175-291)||(16722266-16722382)
chr6 (173-291)||(9236013-9236132)
chr6 (186-291)||(13144470-13144574)
chr6 (168-291)||(6331593-6331716)
chr6 (171-238)||(13144586-13144653)
chr6 (168-291)||(13141264-13141384)
chr6 (208-291)||(6331459-6331542)
chr6 (212-271)||(9974564-9974623)
[»] chr4 (6 HSPs)
chr4 (168-291)||(2549239-2549362)
chr4 (175-291)||(8573160-8573276)
chr4 (175-291)||(8575279-8575395)
chr4 (175-291)||(28461075-28461191)
chr4 (175-291)||(54186515-54186630)
chr4 (207-298)||(17525277-17525368)
[»] chr2 (7 HSPs)
chr2 (168-297)||(24846886-24847015)
chr2 (184-291)||(45404705-45404812)
chr2 (167-263)||(18814557-18814653)
chr2 (181-270)||(40084412-40084501)
chr2 (224-290)||(7724922-7724988)
chr2 (212-290)||(7732322-7732397)
chr2 (169-293)||(32635847-32635971)
[»] chr7 (8 HSPs)
chr7 (167-291)||(24731753-24731877)
chr7 (173-291)||(7711355-7711473)
chr7 (173-291)||(28312660-28312778)
chr7 (192-293)||(3364985-3365087)
chr7 (168-270)||(17710579-17710681)
chr7 (174-293)||(5838503-5838621)
chr7 (175-291)||(2048406-2048520)
chr7 (193-285)||(9242488-9242580)
[»] chr3 (6 HSPs)
chr3 (175-291)||(23358454-23358570)
chr3 (175-291)||(23363275-23363391)
chr3 (175-291)||(28699120-28699236)
chr3 (175-291)||(9638983-9639099)
chr3 (168-270)||(24993328-24993430)
chr3 (226-291)||(36084521-36084586)
[»] chr8 (5 HSPs)
chr8 (168-291)||(19341419-19341542)
chr8 (181-291)||(19371267-19371377)
chr8 (175-293)||(8833483-8833601)
chr8 (181-291)||(29386472-29386583)
chr8 (210-264)||(10564267-10564321)
[»] chr1 (1 HSPs)
chr1 (168-291)||(20427731-20427854)
[»] scaffold1005 (1 HSPs)
scaffold1005 (181-271)||(640-729)
[»] scaffold0554 (1 HSPs)
scaffold0554 (181-298)||(7284-7398)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 15160366 - 15160489
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |    
T  15160366 cactacaacatatatgagatttagtaacacttcaaaattgtaaataaatcaaaaacaaatgttactatttaaatcttgtaacatttgataaatgttaggt 15160465  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||| |||||||||||||||||||    
T  15160466 aaagcccatgttactaaatgattt 15160489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 19615146 - 19615030
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  19615146 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagccc 19615047  T
Q  275 atgttactaaatgattt 291  Q
    |||||||||||||||||    
T  19615046 atgttactaaatgattt 19615030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 30655297 - 30655174
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |    
T  30655297 cactacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgataaatgttaggt 30655198  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||| |  ||||||||||||||||    
T  30655197 aaagccggtgttactaaatgattt 30655174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 14416665 - 14416784
Alignment:
Q  173 caacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagt 272  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||| |||||     
T  14416665 caacatatatgagatttagtaacactttaaatttgtaactaaatcagaaacaaatgttactatttagatcatgtaatatttgaaaaatgttaggtaaaga 14416764  T
Q  273 ccatgttactaaatgatttt 292  Q
     | |||||||||||||||||    
T  14416765 tcgtgttactaaatgatttt 14416784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 4376574 - 4376683
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| |||||||||  |||||||| |||| | |||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||| ||||||||    
T  4376574 acatatatgagattttgtaacacttgaaaaatgtaactaaatcaaaaccaaatgttactatttagatcttgtaacatttgataaatgttaggtaaagtcc 4376673  T
Q  275 atgttactaa 284  Q
     |||||||||    
T  4376674 gtgttactaa 4376683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 1503612 - 1503548
Alignment:
Q  184 agatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaa 248  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  1503612 agatttagtaacactttaaaattataaataaatcaaaaataaatgttactatttagatcttgtaa 1503548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 17012352 - 17012443
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagt 272  Q
    |||||||||| |||||||| ||| || ||| || || ||||| ||||||||||||||| ||||||||| ||||||||||| |||| ||||||    
T  17012352 atgagatttagtaacacttcaaatttgtaattagataaaaaataaatgttactatttagatcttgtaacatttgacaaatattaggtaaagt 17012443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 11507337 - 11507438
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||  ||||| ||||||||| ||||| || |||||    
T  11507337 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa-aaatgttactatttagatcatgtaacttttgataaatgttaggtaaagcccgtgtta 11507435  T
Q  281 cta 283  Q
    |||    
T  11507436 cta 11507438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 11514709 - 11514810
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||  ||||| ||||||||| ||||| || |||||    
T  11514709 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa-aaatgttactatttagatcatgtaacttttgataaatgttaggtaaagcccgtgtta 11514807  T
Q  281 cta 283  Q
    |||    
T  11514808 cta 11514810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 11522110 - 11522211
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||  ||||| ||||||||| ||||| || |||||    
T  11522110 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa-aaatgttactatttagatcatgtaacttttgataaatgttaggtaaagcccgtgtta 11522208  T
Q  281 cta 283  Q
    |||    
T  11522209 cta 11522211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 11529523 - 11529624
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||  ||||| ||||||||| ||||| || |||||    
T  11529523 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa-aaatgttactatttagatcatgtaacttttgataaatgttaggtaaagcccgtgtta 11529621  T
Q  281 cta 283  Q
    |||    
T  11529622 cta 11529624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 11499950 - 11500051
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||  ||||| |||||| || ||||| || |||||    
T  11499950 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa-aaatgttactatttagatcatgtaacttttgataaatgtcaggtaaagcccgtgtta 11500048  T
Q  281 cta 283  Q
    |||    
T  11500049 cta 11500051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 11536928 - 11537016
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaag 271  Q
    |||| ||||| |||||||| |||||| ||||||||| |||||  |||||||||||||| ||| |||||  ||||| ||||||||| |||||    
T  11536928 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa--aatgttactatttagatcatgtaacttttgataaatgttaggtaaag 11537016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 11543016 - 11543116
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| ||||||||| |||||  |||||||||||||| ||| |||||  ||||| ||||||||  ||||| || |||||    
T  11543016 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa--aatgttactatttagatcatgtaacttttgataaatgttaagtaaagcccgtgtta 11543113  T
Q  281 cta 283  Q
    |||    
T  11543114 cta 11543116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 17037535 - 17037639
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttg-acaaatgttagctaaagtccatgtt 279  Q
    |||| ||||| |||||||| |||||  |||||||||||| || ||||||||||| ||| || | |||| ||||| |||| |||||| |||||||  ||||    
T  17037535 atgacatttagtaacacttgaaaatcgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgtt 17037633  T
Q  280 actaaa 285  Q
    ||||||    
T  17037634 actaaa 17037639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 9333668 - 9333565
Alignment:
Q  182 tgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttga-caaatgttagctaaagtccatgtta 280  Q
    ||||||||  ||||| || |||||| |||| ||||||| || ||||||||||| ||| || | |||| |||||| ||| |||||| ||||||| ||||||    
T  9333668 tgagattttgtaacaattgaaaattgtaacaaaatcaagaa-aaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagtcgatgtta 9333570  T
Q  281 ctaaa 285  Q
    |||||    
T  9333569 ctaaa 9333565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 9354496 - 9354393
Alignment:
Q  182 tgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttga-caaatgttagctaaagtccatgtta 280  Q
    ||||||||| ||||| || |||||| ||||| |||||| || ||||||||||| ||| || |  ||| |||||| ||| |||||| ||||| ||||||||    
T  9354496 tgagatttagtaacaattgaaaattgtaactgaatcaagaa-aaatgttactaattaaatttaataacatttgagcaattgttaggtaaagcccatgtta 9354398  T
Q  281 ctaaa 285  Q
    |||||    
T  9354397 ctaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 31069070 - 31068971
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||| ||||| |||||||| |||||| |||||||||||| || ||||||||||| ||| || | |||| |||  |||| |||||| ||||| || |||||    
T  31069070 atgacatttagtaacacttaaaaattgtaactaaatcaagaa-aaatgttactaattaaatttagtaacattgaacaattgttaggtaaagcccgtgtta 31068972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 6346979 - 6346856
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||||||||||| |||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| || |||||| |||||| ||||||||| |    
T  6346979 cactgcaacatatatgagatttagtaacacattaaaattgtaactaaatcaaaaataaatgttactatttaaattttgtaacatttgataaatgttaggt 6346880  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||| | |||||||||||||||||    
T  6346879 aaagcctatgttactaaatgattt 6346856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 7601448 - 7601332
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| ||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  7601448 acatatataagatttagtaacacttcaaaattgtaattaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagtcc 7601349  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  7601348 gtgttactaaatgattt 7601332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 14003859 - 14003975
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  14003859 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagccc 14003958  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  14003959 gtgttactaaatgattt 14003975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 2671034 - 2671157
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||||||||| ||  ||| | ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |    
T  2671034 cactacaacatatatgagatttaataacatttctaaactgtaactaaattaaaaacaaatgttactatttagatcttataatatttgacaaatgttaggt 2671133  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||| || ||||||||||||||||    
T  2671134 aaagcccgtgttactaaatgattt 2671157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 297
Target Start/End: Complemental strand, 7913523 - 7913394
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||  |||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||| |||||| |||| |||| |    
T  7913523 cactacaacatgtatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactctttagatcttgtaacatttgagaaatattaggt 7913424  T
Q  268 aaagtccatgttactaaatgattttaataa 297  Q
    ||||||  |||||||||||||||| |||||    
T  7913423 aaagtctgtgttactaaatgatttcaataa 7913394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 2668557 - 2668456
Alignment:
Q  185 gatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaa 284  Q
    |||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| || |||||||||    
T  2668557 gatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaa 2668458  T
Q  285 at 286  Q
    ||    
T  2668457 at 2668456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 2567452 - 2567545
Alignment:
Q  200 taaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaatgatttta 293  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| | |||||||| |||||||||||| |||||    
T  2567452 taaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgataaatgtttggtaaagtccgtgttactaaatggtttta 2567545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 16722382 - 16722266
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| ||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| |||| ||||  ||    
T  16722382 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaaccgttactatttagatcttgtaacatttgacaaatattaggtaaaaccc 16722283  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  16722282 gtgttactaaatgattt 16722266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 9236013 - 9236132
Alignment:
Q  173 caacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct-aaag 271  Q
    ||||||| |||||||||| |||||||| |||||  |||||||||||||||||||| |||||||||| || |||||| |||||||||||||||| | |||     
T  9236013 caacatatatgagatttagtaacacttcaaaatcgtaactaaatcaaaaacaaatattactatttaaattttgtaacatttgacaaatgttaggtaaaaa 9236112  T
Q  272 tccatgttactaaatgattt 291  Q
     || ||||||||||||||||    
T  9236113 cccgtgttactaaatgattt 9236132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 13144574 - 13144470
Alignment:
Q  186 atttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaa 285  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||||||  |||||||| |||||||||||||||| ||||| || ||||||||||    
T  13144574 atttagtaacacttcaaaattgtaactaaatcaaaaacaaatattactatttaggtcttgtaacatttgacaaatgttaggtaaag-ccgtgttactaaa 13144476  T
Q  286 tgattt 291  Q
    | ||||    
T  13144475 taattt 13144470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 6331716 - 6331593
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||| |||||||||||| || ||||||||| |||||||||||| |||||||| ||||| ||| |||||| |||| |||| |    
T  6331716 cactacaacatatatgagatttagtaacactttaaagttgtaactaaataaaaaacaaatgtcactatttagatcttataacatttgagaaatattaggt 6331617  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||  |  |||||| |||||||||    
T  6331616 aaaacctgtgttacaaaatgattt 6331593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 13144653 - 13144586
Alignment:
Q  171 tgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactattta 238  Q
    ||||||||| |||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||    
T  13144653 tgcaacatatatgagatttagtaacacttcaacattgtaactaaatcaaaaacaaatgttactattta 13144586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 13141264 - 13141384
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||| ||||  |||||||| ||| || ||||||||| ||||| ||||||||||||||| |||| |||| |||||| ||||||||| |    
T  13141264 cactacaacatatatgaaattttgtaacacttcaaagttgtaactaaataaaaaa-aaatgttactatttagatctcgtaacatttgataaatgttaggt 13141362  T
Q  268 aaagtccatgttactaaatgattt 291  Q
      || || ||||||||||||||||    
T  13141363 --agcccgtgttactaaatgattt 13141384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 6331542 - 6331459
Alignment:
Q  208 taactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaatgattt 291  Q
    ||||||||| ||||||||||||||||||||| || |||||| || |||||| |||||| ||||  || ||||||| ||||||||    
T  6331542 taactaaataaaaaacaaatgttactatttagattttgtaacatatgacaattgttaggtaaatcccgtgttacttaatgattt 6331459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 9974623 - 9974564
Alignment:
Q  212 taaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaag 271  Q
    |||||||||||||||| |||||||||| ||||||||  |||||||||||||||| |||||    
T  9974623 taaatcaaaaacaaatattactatttagatcttgtatcatttgacaaatgttaggtaaag 9974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 2549239 - 2549362
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||| ||||||||  ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  2549239 cactacaacatatatgagatttagtaacacttctaaattgtaattaaatcaaaaacaaatgttactatttaaatcttgtaatatttgacaaatgttaggt 2549338  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||  || ||||||||||||||||    
T  2549339 aaaacccgtgttactaaatgattt 2549362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 8573276 - 8573160
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  8573276 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagccc 8573177  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  8573176 gtgttactaaatgattt 8573160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 8575395 - 8575279
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  8575395 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagccc 8575296  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  8575295 gtgttactaaatgattt 8575279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 28461075 - 28461191
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| || ||||||||    
T  28461075 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgtcaggtaaagtcc 28461174  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  28461175 gtgttactaaatgattt 28461191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 54186515 - 54186630
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  54186515 acatatataagatttagtaacactttaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaag-cc 54186613  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  54186614 gtgttactaaatgattt 54186630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 17525368 - 17525277
Alignment:
Q  207 ataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaatgattttaataat 298  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||| |||| ||| ||||||||||| |||||| ||||    
T  17525368 ataactaaatcaaaaacaaatgttactatttagatcttgtaacattggataaatgttagataaactccgtgttactaaattattttagtaat 17525277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 168 - 297
Target Start/End: Complemental strand, 24847015 - 24846886
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| |||||||||||||||||  ||||| || |||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||| |    
T  24847015 cactacaacatacatgagattttgtaacatttcaaaattgtaactaaatcaaaaacaaatgttactatttatatcttacaacatttgacaaatgttaggt 24846916  T
Q  268 aaagtccatgttactaaatgattttaataa 297  Q
    |||  || |||||||||||||||| |||||    
T  24846915 aaatcccgtgttactaaatgatttcaataa 24846886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 184 - 291
Target Start/End: Complemental strand, 45404812 - 45404705
Alignment:
Q  184 agatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttacta 283  Q
    ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| || ||||||||    
T  45404812 agatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttacta 45404713  T
Q  284 aatgattt 291  Q
    ||||||||    
T  45404712 aatgattt 45404705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 18814557 - 18814653
Alignment:
Q  167 ccactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgtt 263  Q
    ||||| || |||| |||||||||  ||||||||  ||||| ||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  18814557 ccactacaccatatatgagatttggtaacacttataaattgtaactgaatcaaaaactaatgttactatttagatcttgtaacatttgacaaatgtt 18814653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 40084501 - 40084412
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaa 270  Q
    |||||||||| |||||||| |||| ||||||||||| ||||| |  ||||| ||||||  |||||||| |||||| |||| |||| ||||    
T  40084501 atgagatttagtaacacttaaaaaatataactaaataaaaaataggtgttattatttagttcttgtaacatttgataaatattaggtaaa 40084412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 7724922 - 7724988
Alignment:
Q  224 aaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaatgatt 290  Q
    ||||||||||||||| || | ||||||||||| ||||||||  ||||| || | |||||||||||||    
T  7724922 aaatgttactatttaaatttagtaatatttgataaatgttacgtaaagcccgtattactaaatgatt 7724988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 7732322 - 7732397
Alignment:
Q  212 taaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaatgatt 290  Q
    ||||| ||||| ||||||||||||||| || | ||||||| |   ||||||| | ||||||| ||||||||||||||||    
T  7732322 taaataaaaaaaaaatgttactatttaaatttagtaatatat---aaatgtttggtaaagtctatgttactaaatgatt 7732397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 32635847 - 32635971
Alignment:
Q  169 actgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagcta 268  Q
    ||||||||||| |||| ||||||||| | || |||| | | ||||| |  ||||  |||||||||||||| || | ||||||||||| || |||||| ||    
T  32635847 actgcaacatatatgacatttaataatatttgaaaaatgttactaagtataaaaacaatgttactatttaaatttagtaatatttgataagtgttaggta 32635946  T
Q  269 aagtccatgttactaaatgatttta 293  Q
    ||  | ||||| ||||||| |||||    
T  32635947 aaacctatgttgctaaatggtttta 32635971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 291
Target Start/End: Complemental strand, 24731877 - 24731753
Alignment:
Q  167 ccactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagc 266  Q
    ||||| ||||||| |||||||||| |||||||| |||||| ||| ||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||     
T  24731877 ccactacaacatatatgagatttagtaacacttcaaaattgtaattaaatcaaaaataaatgttactatttagatcttgtaacatttgataaatgttagg 24731778  T
Q  267 taaagtccatgttactaaatgattt 291  Q
    ||||  |||||||||||||||||||    
T  24731777 taaaacccatgttactaaatgattt 24731753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 7711473 - 7711355
Alignment:
Q  173 caacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagt 272  Q
    ||||||| |||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||| |||||     
T  7711473 caacataaatgagatttagtaacacttctaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgatgaatgttaggtaaagc 7711374  T
Q  273 ccatgttactaaatgattt 291  Q
    || ||||||||||||||||    
T  7711373 ccgtgttactaaatgattt 7711355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 28312660 - 28312778
Alignment:
Q  173 caacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagt 272  Q
    ||||||| |||||||||| ||||| || ||||||  |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||     
T  28312660 caacatatatgagatttagtaacaattcaaaattgcaactaaatcaaaaacaaatgttactatttagatcttgtaacatttcacaaatgttaggtaaagc 28312759  T
Q  273 ccatgttactaaatgattt 291  Q
    || ||||||||||||||||    
T  28312760 ccgtgttactaaatgattt 28312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 192 - 293
Target Start/End: Original strand, 3364985 - 3365087
Alignment:
Q  192 taacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc-atgttactaaatgatt 290  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||  |||||||||||||||    
T  3364985 taacactttaaaattgtaactaaatcaaaaacaattgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccggtgttactaaatgatt 3365084  T
Q  291 tta 293  Q
    |||    
T  3365085 tta 3365087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 17710579 - 17710681
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||| |||||| | ||||||  || ||||| ||||||||||||||||||||| ||||||||| || ||||||||||||| |    
T  17710579 cactacaacatatatgagatttagtaacacgtcaaaattgcaattaaattaaaaacaaatgttactatttagatcttgtaacatgtgacaaatgttaggt 17710678  T
Q  268 aaa 270  Q
    |||    
T  17710679 aaa 17710681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 293
Target Start/End: Original strand, 5838503 - 5838621
Alignment:
Q  174 aacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtc 273  Q
    |||||| |||||||||| ||| |||| |||||| ||||||||| | |||||| ||||||||| || ||||||||| |||||| ||||||||| ||||  |    
T  5838503 aacatatatgagatttagtaatacttgaaaattttaactaaataataaacaa-tgttactatataaatcttgtaacatttgataaatgttaggtaaatcc 5838601  T
Q  274 catgttactaaatgatttta 293  Q
    | | ||||||||||||||||    
T  5838602 cgtcttactaaatgatttta 5838621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 2048520 - 2048406
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| |||||||||  ||||| || |||| | ||| ||||| |||||  ||||||||||||||  | | |||| ||||||  |||||||| ||||||||    
T  2048520 acatatatgagattttgtaacatttaaaaaatgtaagtaaataaaaaa--aatgttactatttaggtttggtaacatttgattaatgttaggtaaagtcc 2048423  T
Q  275 atgttactaaatgattt 291  Q
    || ||||||||||||||    
T  2048422 atattactaaatgattt 2048406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 9242580 - 9242488
Alignment:
Q  193 aacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttga-caaatgttagctaaagtccatgttactaaa 285  Q
    ||||||| |||||| |||||||||||| || || |||||||| ||| || |||||| | |||| ||| |||||| |||||||||||||||||||    
T  9242580 aacacttgaaaattgtaactaaatcaagaa-aattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaa 9242488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 23358570 - 23358454
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  23358570 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagccc 23358471  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  23358470 gtgttactaaatgattt 23358454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 23363391 - 23363275
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| ||    
T  23363391 acatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagccc 23363292  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  23363291 gtgttactaaatgattt 23363275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 28699236 - 28699120
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || |||||||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||| ||||| |     
T  28699236 acatatataagatttaataacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaagcct 28699137  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  28699136 gtgttactaaatgattt 28699120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 175 - 291
Target Start/End: Original strand, 9638983 - 9639099
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| || ||||||| |||||||| |||||| ||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||  ||||| ||    
T  9638983 acatatataagatttagtaacacttcaaaattgtaattaaatcaaaaacaattgttactatttagatcttgtaacatttgacaaatgttatgtaaagccc 9639082  T
Q  275 atgttactaaatgattt 291  Q
     ||||||||||||||||    
T  9639083 gtgttactaaatgattt 9639099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 24993328 - 24993430
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| |||||||||| |||||||| |||||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||| ||||||||| |    
T  24993328 cactacaacatatatgagatttagtaacacttcaaaattgtaactaaataaaaaacaaacgttactatttagatcttgtaacatttgaaaaatgttaggt 24993427  T
Q  268 aaa 270  Q
    |||    
T  24993428 aaa 24993430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 36084521 - 36084586
Alignment:
Q  226 atgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgttactaaatgattt 291  Q
    ||||||||||||| |||| |||| |||||||||||||||| ||||| | |||||||||||||||||    
T  36084521 atgttactatttagatctcgtaacatttgacaaatgttaggtaaagcctatgttactaaatgattt 36084586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 19341542 - 19341419
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||||| || ||||||| ||||| || |||||| ||||||||||||||| ||||||||||||||| |||||| || |||||||||||||||| |    
T  19341542 cactacaacatatataagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgaaacatttgacaaatgttaggt 19341443  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||| || ||||||||||||||||    
T  19341442 aaagaccgtgttactaaatgattt 19341419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 19371377 - 19371267
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||||||||| ||||| || |||||| ||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||| |  |||||    
T  19371377 atgagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgtaacatttgacaaatgttaggtaaagactgtgtta 19371278  T
Q  281 ctaaatgattt 291  Q
    |||||||||||    
T  19371277 ctaaatgattt 19371267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 8833483 - 8833601
Alignment:
Q  175 acatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtcc 274  Q
    ||||| |||||||||| ||| || | |||| | |||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||| | ||||||    
T  8833483 acatatatgagatttagtaaaacatgaaaaatgtaactaaatcaaaaccaaatgttactatttagatcttgtaacatttgataaatgttaggtgaagtcc 8833582  T
Q  275 atgttactaaatgatttta 293  Q
     ||||||||||||||||||    
T  8833583 gtgttactaaatgatttta 8833601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 29386472 - 29386583
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaa-tgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtt 279  Q
    |||||||||| ||||| || |||| | ||| ||||| ||||| ||| |||||||||||| || | ||||||||||| ||||| ||| ||||| || ||||    
T  29386472 atgagatttagtaacatttaaaaaatgtaagtaaataaaaaaaaaaatgttactatttagatttagtaatatttgataaatggtaggtaaagcccctgtt 29386571  T
Q  280 actaaatgattt 291  Q
    ||||||| ||||    
T  29386572 actaaataattt 29386583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 10564267 - 10564321
Alignment:
Q  210 actaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgtta 264  Q
    ||||||||||||||||||||||||||||  |||| |||| |||||| ||||||||    
T  10564267 actaaatcaaaaacaaatgttactattttgatctagtaacatttgataaatgtta 10564321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 20427854 - 20427731
Alignment:
Q  168 cactgcaacatacatgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagct 267  Q
    |||| ||||| | |||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||| |    
T  20427854 cactacaacacatatgagatttagtaacaattcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacttttgacaaatgttaggt 20427755  T
Q  268 aaagtccatgttactaaatgattt 291  Q
    |||  || ||||||||||| ||||    
T  20427754 aaaacccgtgttactaaataattt 20427731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 640 - 729
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaag 271  Q
    |||| ||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||  ||||| ||||||||| |||||    
T  640 atgaaatttagtaacacttaaaaattgtaactaaataaaaaa-aaatgttactatttagatcatgtaacttttgataaatgttaggtaaag 729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 298
Target Start/End: Original strand, 7284 - 7398
Alignment:
Q  181 atgagatttaataacactttaaaattataactaaatcaaaaacaaatgttactatttatatcttgtaatatttgacaaatgttagctaaagtccatgtta 280  Q
    |||||||||| ||||| || ||| || | ||||||| |||||   ||||||||||||| |||||| |  |||||| ||||||||| ||||| | ||||||    
T  7284 atgagatttagtaacatttgaaatttgttactaaataaaaaa---atgttactatttacatcttgaaggatttgataaatgttaggtaaagccaatgtta 7380  T
Q  281 ctaaatgattttaataat 298  Q
    ||||||| ||||| ||||    
T  7381 ctaaatggttttagtaat 7398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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