View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_24 (Length: 277)
Name: NF5794_low_24
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 51876441 - 51876211
Alignment:
| Q |
10 |
aacaaaatgtacggattatcttcaagaaaaatatagtatgtagtgtgaggcttagatgcacaagaaaaatcatggcccgtacaatccatgagagttcaac |
109 |
Q |
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| T |
51876441 |
aacaaaatgtactgattatcttcaagaaaaatatagtatgtagtgtgaggcttagatgcacaagaaaaatcatggcccgtacaatccatgagagttcaac |
51876342 |
T |
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| Q |
110 |
attggaagaattaaagtgtttttcagtagaattatgggccggacagaatgataaaaacgacaacaccatacttcatagcttaatttttgtactacaaact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51876341 |
attggaagaattaaagtgtttttcagtagaattatggcccggacagaatgataaaaacgacaacaccatacttcatagcttaatttttgtactacaaact |
51876242 |
T |
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| Q |
210 |
tcttgctcattcaacttttttcttattctct |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
51876241 |
tcttgctcattcaacttttttcttattctct |
51876211 |
T |
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