View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_25 (Length: 272)
Name: NF5794_low_25
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 28609551 - 28609683
Alignment:
| Q |
140 |
tccccaactcccaccaacccaattccaccacaaactttaagaacacgaggaaatgtgaaaatatctggttcaacaccctcttccaccatttgaaaataaa |
239 |
Q |
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| T |
28609551 |
tccccaacacccaccaacccaattccaccacaaactttaagaacacgaggaaatgtgaaaatatctggttcaacaccctcttccaccatttgaaaataaa |
28609650 |
T |
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| Q |
240 |
gcgcaatagcatcatcataaagacccatctctg |
272 |
Q |
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| T |
28609651 |
gcgcaatagcatcatcataaagacccatctctg |
28609683 |
T |
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Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 28609384 - 28609515
Alignment:
| Q |
12 |
aacctgtgagcatcgagttccatgaaaccgagtctctaaaatgcatcttattaaaaatcttcctcgccttcacgatgtcaccacacttagaatacatgtc |
111 |
Q |
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|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609384 |
aacccgtgagcatcgagttccacgaaactgagtctctaaaatgcatcttattaaaaatcttcctcgccttcacgatgtcaccacacttagaatacatgtc |
28609483 |
T |
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| Q |
112 |
aacaagtgcattaagcacaaacccgtcatccc |
143 |
Q |
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| T |
28609484 |
aacaagtgcattaagcacaaacccgtcatccc |
28609515 |
T |
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