View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_30 (Length: 251)
Name: NF5794_low_30
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_30 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 38626490 - 38626735
Alignment:
| Q |
1 |
tgccttaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtacacgaaagaaacaacataagattaaaaaattaaag |
100 |
Q |
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| T |
38626490 |
tgccctaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtacacgaaagaaacaacataagattaaaaaattaaag |
38626589 |
T |
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| Q |
101 |
acacacagaaaattatgtgtgtgtttcgtctcaattttggatggagcaaattttattttgacatgtttggatgtttccagtaaaattgattttgcctcgg |
200 |
Q |
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| T |
38626590 |
acacacagaaaattatgtgtgcgtttcgtctcaattttggatggagcaaattttattttgacatgtttggatgtttccagtaaaattgattttgcctcgg |
38626689 |
T |
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| Q |
201 |
gaattgattataacttgagacttgaatttgtatctttcatctcact |
246 |
Q |
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| T |
38626690 |
gaattgattataacttgagacttgaatttgtatctttcaactcact |
38626735 |
T |
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Target: scaffold0393 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 12444 - 12378
Alignment:
| Q |
153 |
ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
218 |
Q |
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| T |
12444 |
ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga |
12378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 10898672 - 10898736
Alignment:
| Q |
155 |
attttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
218 |
Q |
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| T |
10898672 |
attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttga |
10898736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 38045390 - 38045460
Alignment:
| Q |
146 |
gcaaattttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataact |
215 |
Q |
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| T |
38045390 |
gcaaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctccggtattgattttaact |
38045460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 29922575 - 29922640
Alignment:
| Q |
154 |
tattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
218 |
Q |
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| T |
29922575 |
tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttga |
29922640 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 2171738 - 2171801
Alignment:
| Q |
156 |
ttttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
218 |
Q |
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| T |
2171738 |
ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttga |
2171801 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 45369107 - 45369176
Alignment:
| Q |
150 |
attttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
218 |
Q |
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| T |
45369107 |
atttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttga |
45369176 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 5997418 - 5997374
Alignment:
| Q |
155 |
attttgacatgtttggatg-tttccagtaaaattgattttgcctc |
198 |
Q |
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| T |
5997418 |
attttgacatgtttggatgtttttgagtaaaattgattttgcctc |
5997374 |
T |
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