View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_32 (Length: 248)
Name: NF5794_low_32
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 3951009 - 3951241
Alignment:
| Q |
5 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggaga |
104 |
Q |
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| T |
3951009 |
cttgtgtttcccttattgtgacgttcaaggttctagagaca--gaaagattgttcgtagtgcacttgttccaatccaatggcatatttgccttctggagc |
3951106 |
T |
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| Q |
105 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatg |
204 |
Q |
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| T |
3951107 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaatttgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatg |
3951206 |
T |
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| Q |
205 |
taattatagttttcagttctatatttgtagatatt |
239 |
Q |
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| T |
3951207 |
taattatagttttcagttctatatttgtagatatt |
3951241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 4005402 - 4005234
Alignment:
| Q |
5 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggaga |
104 |
Q |
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| T |
4005402 |
cttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgttccagttcaatggcatatttatcttctggaac |
4005303 |
T |
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| Q |
105 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctga |
174 |
Q |
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| T |
4005302 |
ttctcaactaatatatgctgtaattgctctgtttattaaattcgaatttgt-gttatgaattaatgctga |
4005234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 4013652 - 4013526
Alignment:
| Q |
1 |
taatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| | |||||||||| ||||||| ||||||||||| | |
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| T |
4013652 |
taatcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttccgtgtgaaattgttccaattcaatggcgtatttgtcttccg |
4013553 |
T |
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| Q |
101 |
gagactctcaaacaatatatgctgtaa |
127 |
Q |
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| T |
4013552 |
gagcttctcaaataatatatgctgtaa |
4013526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 4215900 - 4215801
Alignment:
| Q |
57 |
ttcatagtgcacttgttccaatccaatggcatatttgtcttctggagactctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtg |
156 |
Q |
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| T |
4215900 |
ttcatactgcacttgttccaaaccaatgtcatatttgtcttctggagcctctcaaacaatatctgctgtaaatactctgattatcaatttctaatttgtg |
4215801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 4027869 - 4027659
Alignment:
| Q |
4 |
tcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggag |
103 |
Q |
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|||||||||||||||||||| | ||| |||| |||||||| ||||||||| ||||| |||||| |||||||||| ||||||| ||||||| ||| ||| |
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| T |
4027869 |
tcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagag |
4027770 |
T |
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| Q |
104 |
actctcaaacaatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtat |
203 |
Q |
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| T |
4027769 |
cttctcaaataatttatgctgtaa--tgtctgcttattaaattcgaatttgt-gttacgaattgatcctgaaactttaagatttttcaatgaaacagtat |
4027673 |
T |
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| Q |
204 |
gtaattatagtttt |
217 |
Q |
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| T |
4027672 |
gtaatcatggtttt |
4027659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 3991341 - 3991243
Alignment:
| Q |
5 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggag |
103 |
Q |
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|||||||||||||||||| | |||||||||||| |||| ||||||||||||||| |||| | |||||||||| ||||||| |||||||||| |||| |
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| T |
3991341 |
cttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtcttccggag |
3991243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 13400584 - 13400441
Alignment:
| Q |
5 |
cttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgttccaatccaatggcatatttgtcttctggaga |
104 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| |
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| T |
13400584 |
cttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatagcgc--ttgttccaatccaatggcatatttttcttctggagc |
13400487 |
T |
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| Q |
105 |
ctctcaaacaatatatgctgtaaatactctgcttatcaatttcaaa |
150 |
Q |
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| T |
13400486 |
ctctccaacaatatatgctgtaaatactctgcttatcaatttcaaa |
13400441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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