View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_41 (Length: 239)
Name: NF5794_low_41
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47798648 - 47798414
Alignment:
| Q |
1 |
ccattaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagca |
100 |
Q |
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| T |
47798648 |
ccattaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagca |
47798549 |
T |
|
| Q |
101 |
tcgctatgcttcgatgtgtggccaaatatcttgaaatgacagaagattattc------------ggtaggaataaccgattcttacttgaatgaagttgc |
188 |
Q |
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| T |
47798548 |
tcactatgcttcgatgtgtggccaaatatcttgaaatgacagaagattattcggacagaaatatggtaggaagaaccgattcttacttgaatgaagttgc |
47798449 |
T |
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| Q |
189 |
actcaagagcatgtcaggggcaatatccatcttac |
223 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
47798448 |
actcaagagcatgtcaggggcaatatccatcttac |
47798414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39777495 - 39777729
Alignment:
| Q |
1 |
ccattaattgaactcattgacgtctctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagca |
100 |
Q |
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||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| || |
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| T |
39777495 |
ccattaattgaactcatcgatgtccctggtggatcagaagcatttgaactagcagcaaagttctgttacgggataaacttcgaaataagcgtcgaaaaca |
39777594 |
T |
|
| Q |
101 |
tcgctatgcttcgatgtgtggccaaatatcttgaaatgacagaagattattc------------ggtaggaataaccgattcttacttgaatgaagttgc |
188 |
Q |
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| T |
39777595 |
tcgctatgcttcgatgtgtagccgagtatcttgaaatgacagaagattattcggtcggaaatttggtaggaagaactgattcttacttgaatgaagttgc |
39777694 |
T |
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| Q |
189 |
actcaagagcatgtcaggggcaatatccatcttac |
223 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39777695 |
actcaagagcatgtcaggggcaatatccatcttac |
39777729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 5677888 - 5677762
Alignment:
| Q |
26 |
ctggtggatcagaaacatttgaactagcagcaaagttctgttactggataaactttgaaataagcgttgaaagcatcgctatgcttcgatgtgtggccaa |
125 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||| ||| | ||||| || || |||| || |||| ||||||||||||||||||||||||| | |
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| T |
5677888 |
ctggtggagcagaagcatttgaactagcagcaaaattctgctacggtataaatttcgagataaatgtggaaaacatcgctatgcttcgatgtgtggccga |
5677789 |
T |
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| Q |
126 |
atatcttgaaatgacagaagattattc |
152 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
5677788 |
atatcttgagatgacagaagattattc |
5677762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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