View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_7 (Length: 437)
Name: NF5794_low_7
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 37078050 - 37078470
Alignment:
| Q |
17 |
cttttttccctccatcttttattcagtctctctcctctaatgcaaatggttacatacttatattcttgtgaattcgataactaacgacgttgacgagttt |
116 |
Q |
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| T |
37078050 |
cttttttccctccatcttttattcagtctctctcctctaatgcaaatggttacatacttatattcttgtgaattcgataactaacgacgttgacgaattt |
37078149 |
T |
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| Q |
117 |
tcctttacgttctccgcttacaaaaatggtaataaagatgattttctctttctgtatttcatttttatgctttctctttgtttaacccttactttaatgt |
216 |
Q |
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| T |
37078150 |
tcctttacgttctccgcttacaaaaatggtaataaagatgattttctctttctgtatttcatttttatgctttctctttgtttaacccttactttaatgt |
37078249 |
T |
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| Q |
217 |
ataatccatcataatctggaaaatgaagctaataaattaaaacatttcttgaactatataggttttagtattattaatttcgtccttttaaattagtatt |
316 |
Q |
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| T |
37078250 |
ataatccatcataatctgaaaaatgaagctaataaattaaaacatttcttgaactatataggttttagtattattaatttcgtccttttaaattagtatt |
37078349 |
T |
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| Q |
317 |
ttaaccttatatttgcgatcaatttcttatgaaattcattgctaattgtataactaggggccagtcatgattgactcaaataagtctcatggcgggcgtt |
416 |
Q |
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| T |
37078350 |
ttaaccttatatttgcgatcaatttcttatgaaattcattgctaattgtataactaggggccagtcatgattgactcaaataagtctcatggcgggcgtt |
37078449 |
T |
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| Q |
417 |
tactttgccgacctcacttag |
437 |
Q |
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| T |
37078450 |
tactttgccaacctcacttag |
37078470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 377
Target Start/End: Original strand, 37063660 - 37063772
Alignment:
| Q |
273 |
tataggttttagtattattaatttcgtccttttaaattagtattttaaccttatatttgcgatcaat--------ttcttatgaaattcattgctaattg |
364 |
Q |
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| T |
37063660 |
tatatgttttggtattattaatttcatctgtttaaattagtattttaaccttataattatgatcaataagtgctaggcttatgaaattcattgctaattg |
37063759 |
T |
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| Q |
365 |
tataactaggggc |
377 |
Q |
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| T |
37063760 |
tataactatgggc |
37063772 |
T |
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