View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794_low_8 (Length: 428)

Name: NF5794_low_8
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794_low_8
NF5794_low_8
[»] chr2 (1 HSPs)
chr2 (5-410)||(3607769-3608156)
[»] chr4 (3 HSPs)
chr4 (302-370)||(47304091-47304159)
chr4 (314-355)||(30727318-30727359)
chr4 (304-357)||(51357549-51357602)
[»] chr7 (1 HSPs)
chr7 (306-357)||(43427085-43427136)
[»] chr1 (1 HSPs)
chr1 (304-383)||(25987678-25987757)
[»] chr3 (1 HSPs)
chr3 (304-353)||(48251208-48251257)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 410
Target Start/End: Original strand, 3607769 - 3608156
Alignment:
Q  5 aggagcagagattgaataatgtggtgaactataggcctgtggactcatgtgattcagactcaatttgaggatagcttgagaatctgagtcattgttagga 104  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3607769 aggagaagagattgaataatgtggtgaactataggcctttggactcatgtgattcagactcaatttgaggatagcttgagaatctgagtcattgttagga 3607868  T
Q  105 ttactggttccatataagtggttgttattctcatcctcttcaaactatgcaaagtggaggttcatttccttgatattttcttctcattctttctcctttc 204  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  3607869 ttactagttccatataagtggttgttattctcatcctcttcaaactatgcaaagtggaggttcatttccttgatattttcttctcattctttct------ 3607962  T
Q  205 ccccgcgttcacaacttcttttatccttgtaggttgataattagttaatttttaatcgtctttagatatccgtggataaaatatgtcatgagtatatgac 304  Q
      ||||||||||||||||||||||||||||||||||||||          ||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  3607963 --ccgcgttcacaacttcttttatccttgtaggttgataa----------tttaatcgtctttggatattcgtggataaaatatgtcatgagtacatgac 3608050  T
Q  305 agatacctcaatgaatatctatgaataaaataaatgaatattttaattatctgtaatttaaaggatacaaatatggattggatgatatttgcattcgtag 404  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  3608051 agatacctcaatggatatctatggataaaataaacgaatattttaattatctgtaatttaaatgatgcaaatatggattggatgatatttacattcgtag 3608150  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 47304159 - 47304091
Alignment:
Q  302 gacagatacctcaatgaatatctatgaataaaataaatgaatattttaattatctgtaatttaaaggat 370  Q
    ||||||||||| || || ||||||||||||||||||||| ||||||| | |||| || |||||| ||||    
T  47304159 gacagataccttaacgattatctatgaataaaataaatggatatttttactatccgttatttaatggat 47304091  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 30727359 - 30727318
Alignment:
Q  314 aatgaatatctatgaataaaataaatgaatattttaattatc 355  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  30727359 aatgaatatcaattgataaaataaatgaatattttaattatc 30727318  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 51357602 - 51357549
Alignment:
Q  304 cagatacctcaatgaatatctatgaataaaataaatgaatattttaattatctg 357  Q
    ||||||||| |||| |||| |||| |||||||||| | ||||||||||||||||    
T  51357602 cagataccttaatggatatttatggataaaataaacggatattttaattatctg 51357549  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 43427085 - 43427136
Alignment:
Q  306 gatacctcaatgaatatctatgaataaaataaatgaatattttaattatctg 357  Q
    ||||||| |||| | ||| |||||||||||||||| ||||||||||||||||    
T  43427085 gataccttaatggacatccatgaataaaataaatggatattttaattatctg 43427136  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 25987757 - 25987678
Alignment:
Q  304 cagatacctcaatgaatatctatgaataaaataaatgaatattttaattatctgtaatttaaaggatacaaatatggatt 383  Q
    ||||||||| |||| ||||||||| ||||||||||||||| |||||| || | |  | |||| |||||||||| ||||||    
T  25987757 cagataccttaatggatatctatggataaaataaatgaattttttaactacccgctaattaatggatacaaatgtggatt 25987678  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 48251208 - 48251257
Alignment:
Q  304 cagatacctcaatgaatatctatgaataaaataaatgaatattttaatta 353  Q
    ||||||| | |||| ||||||||| |||||||||||| ||||||||||||    
T  48251208 cagatactttaatggatatctatggataaaataaatggatattttaatta 48251257  T

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