View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_low_9 (Length: 423)
Name: NF5794_low_9
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 106 - 408
Target Start/End: Complemental strand, 7727905 - 7727604
Alignment:
| Q |
106 |
tttttgttcccttctctttaatgatatattgtggtagcagccctttactccacatatacctccctagacgtcaatgtatatatggttggatgcattcaaa |
205 |
Q |
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| T |
7727905 |
tttttgttcccttctctttaatgatatattgtggtagcagccctttactccacatacacctccctagacgtcaatgtatatatggttggatgcattcaaa |
7727806 |
T |
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| Q |
206 |
gggtcttatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaa |
305 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7727805 |
gggtcatatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagattaa |
7727706 |
T |
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| Q |
306 |
aaccatacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataagnnnnnnnnctccaaaattaagatgaagactcctcca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7727705 |
aaccatacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataag-aaaaaaactccaaaattaagatgaagactcctcca |
7727607 |
T |
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| Q |
406 |
aac |
408 |
Q |
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||| |
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| T |
7727606 |
aac |
7727604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 218 - 367
Target Start/End: Complemental strand, 7731965 - 7731814
Alignment:
| Q |
218 |
attattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaaaa-ccatactta |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| | |
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| T |
7731965 |
attattttaagcctccttgtttgaccaactttcactaaaacagatatacatcctggcgactacgaattctataaatagcaaagcttaaaattaatactaa |
7731866 |
T |
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| Q |
317 |
tcacccaaacttgagtactctctcaacccaaa-ctcaaaccacctcttcata |
367 |
Q |
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| T |
7731865 |
tcacccaaacttgagtactctcttaacacaaagctcaaaccacctcttcata |
7731814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 7728184 - 7728089
Alignment:
| Q |
19 |
aagagaatattatgtaaagaatagacttggtgcctaactataggtttatcaattcctaggaggttgcgcctttatgtcccctcgttatttttgttc |
114 |
Q |
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| T |
7728184 |
aagagaatactatgtaaagaatagacttggtgcctaactataggtttatcaattcctaggaggttgcggctttatgtcccctcgttatttttgttc |
7728089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 7740106 - 7739995
Alignment:
| Q |
212 |
tatctcattattttaagcctttctgtttgaccaactttcactaaaacagatatacatcctggctgctacgaattctataaatagcaaagtttaaaaccat |
311 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
7740106 |
tatctcattattttaagcctacttgtttgaccaactttcactaaaacagata--catactggctgctacgttttctataaatagcaaagcttaaaatcat |
7740009 |
T |
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| Q |
312 |
acttatcacccaaa |
325 |
Q |
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|||||||||||||| |
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| T |
7740008 |
acttatcacccaaa |
7739995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 3562389 - 3562324
Alignment:
| Q |
20 |
agagaatattatgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt |
83 |
Q |
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|||||||||||||| |||||||||||||| ||||||| | |||||||||||| | |||||||||| |
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| T |
3562389 |
agagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt |
3562324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 9748946 - 9748892
Alignment:
| Q |
20 |
agagaatattatgtaaagaatagacttgg--tgcctaactataggtttatcaatt |
72 |
Q |
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|||||||||||||| ||||||||||| || ||||||||| |||||||||||||| |
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| T |
9748946 |
agagaatattatgttaagaatagactaggtatgcctaactttaggtttatcaatt |
9748892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 34066119 - 34066064
Alignment:
| Q |
30 |
atgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt |
83 |
Q |
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|||| |||||||||||||| ||||||| |||||||||| ||||| |||||||||| |
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| T |
34066119 |
atgttaagaatagacttggtatgcctaattataggtttagcaatttctaggaggtt |
34066064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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