View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5795-Insertion-1 (Length: 1109)
Name: NF5795-Insertion-1
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795-Insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 4e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 25870021 - 25869820
Alignment:
| Q |
33 |
gatgatgatgattccccacccaattccttacgcttcttcttcatcctgtattgatcatcggaccaatttttatctccacctttcatctctctttctttca |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25870021 |
gatgatgatgattccccacccaattccttacgcttcttcttcatcctgtattgatcatcggaccaatttttatctccacctttcatctctctttctttca |
25869922 |
T |
|
| Q |
133 |
agagaaaataa-caacaaaccaaaacttatgaccaatccacttatgtatgtannnnnnnnnnnncctagcggttacttcaacttccaatcgacggtttct |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25869921 |
agagaaaataaccaacaaaccaaaacttatgaccaatccacttatgtatgtaatacacacaccccctagcggttacttcaacttccaattgacggtttct |
25869822 |
T |
|
| Q |
232 |
ac |
233 |
Q |
| |
|
|| |
|
|
| T |
25869821 |
ac |
25869820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 43383207 - 43383160
Alignment:
| Q |
84 |
tgatcatcggaccaatttttatctccacctttcatctctctttctttc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43383207 |
tgatcatcggaccaatttttatctccacctttcatctctctttctttc |
43383160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 43383294 - 43383254
Alignment:
| Q |
33 |
gatgatgatgattccccacccaattccttacgcttcttctt |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43383294 |
gatgatgatgattccccacccaattccttactcttcttctt |
43383254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 890 - 966
Target Start/End: Complemental strand, 36390363 - 36390284
Alignment:
| Q |
890 |
gagcaattg-tgtaccaccaaccttcatcaaggataatctcagcaatggta-ccaaaacaacaa-tgagtttgtctgcaa |
966 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||| |||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
36390363 |
gagcaattggtgtaccaccatccttcatcaacgatgatctcaacaatggtacccaaaacaacaattgagtttgtctgcaa |
36390284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 890 - 962
Target Start/End: Original strand, 36390797 - 36390872
Alignment:
| Q |
890 |
gagcaattg-tgtaccaccaaccttcatcaaggataatctcagcaatggta-ccaaaacaacaa-tgagtttgtct |
962 |
Q |
| |
|
||||||||| |||||||||| |||||| ||| ||| ||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
36390797 |
gagcaattggtgtaccaccatccttcaccaacgatgatctcagcaatggtacccaaaacaacaattgagtttgtct |
36390872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University