View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5795-Insertion-10 (Length: 241)
Name: NF5795-Insertion-10
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795-Insertion-10 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 7129255 - 7129491
Alignment:
| Q |
5 |
atcaacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcga |
104 |
Q |
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||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7129255 |
atcaaaattaagggcctcaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcga |
7129354 |
T |
|
| Q |
105 |
acctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7129355 |
acctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttga |
7129454 |
T |
|
| Q |
205 |
gcttttccaaccagagttgaacttgatggttgttggc |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7129455 |
gcttttccaaccagagttgaacttgatggttgttggc |
7129491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 7494283 - 7494050
Alignment:
| Q |
7 |
caacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaac |
106 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7494283 |
caacattaagggcctcaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgtgaaa |
7494184 |
T |
|
| Q |
107 |
ctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagc |
206 |
Q |
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| T |
7494183 |
ctttttagccttcttgttactggtcatcacctgtcgcctcaagtcttccgtgttaaagtcatcgagcaagtcatcggcatcatcaagagcatctttcagc |
7494084 |
T |
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| Q |
207 |
ttttccaaccagagttgaacttgatggttgttgg |
240 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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| T |
7494083 |
ttttccaaccacagttgaacttgatggttgttgg |
7494050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 7481881 - 7481648
Alignment:
| Q |
7 |
caacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaac |
106 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7481881 |
caacattaagagcctcaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgtaaaa |
7481782 |
T |
|
| Q |
107 |
ctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagc |
206 |
Q |
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||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
7481781 |
ctttttagccttcttgttactggtcatgacttgtcgcctcaagtcttcagtgttaaagtcatcgagcaagtcatcggcatcatcaagagcatctttgagc |
7481682 |
T |
|
| Q |
207 |
ttttccaaccagagttgaacttgatggttgttgg |
240 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
7481681 |
ttttccagccagagttgaacttgatggttgttgg |
7481648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 7519950 - 7519717
Alignment:
| Q |
7 |
caacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaac |
106 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7519950 |
caacattaagggcctcaattctcttactaagttccttaattatctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgtgaaa |
7519851 |
T |
|
| Q |
107 |
ctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagc |
206 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || ||| |
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| T |
7519850 |
ctttttagccttcttgttacaggtcatcacttgtcgcctcaagtcttcggtgttgaagtcatcaagcaagttatcggcatcatcaagagcatctttcagc |
7519751 |
T |
|
| Q |
207 |
ttttccaaccagagttgaacttgatggttgttgg |
240 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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| T |
7519750 |
ttttccaaccacagttgaacttgatggttgttgg |
7519717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 7722529 - 7722764
Alignment:
| Q |
5 |
atcaacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcga |
104 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |
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| T |
7722529 |
atcaatattaagggcctcaattctcttactaagttccttaattttctgaaccattttgtatgaaaagagaagttggttggatgatgagaagaagatgcaa |
7722628 |
T |
|
| Q |
105 |
acctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttga |
204 |
Q |
| |
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| ||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
7722629 |
aactttttagccttcttgttactggtcatcacttgtcgcctcaagtcttcagtgttaaagtcatcaagcacgtcatcggcatcatcaagagcatctttga |
7722728 |
T |
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| Q |
205 |
gcttttccaaccagagttgaacttgatggttgttgg |
240 |
Q |
| |
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| ||||| | |||||||||||||||||||||||||| |
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| T |
7722729 |
gattttcaagccagagttgaacttgatggttgttgg |
7722764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 7528002 - 7527767
Alignment:
| Q |
5 |
atcaacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcga |
104 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7528002 |
atcaacattaagggcctcaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgg |
7527903 |
T |
|
| Q |
105 |
acctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttga |
204 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||| ||| || ||||||||||||||||||| |||||| |||| |
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| T |
7527902 |
acctttttagctttcttgtgattggtcatcacttgtcgcctcagttcttccgtgttgaagtaatcgagaaagtcatcggcatcatcaaaagcatctttga |
7527803 |
T |
|
| Q |
205 |
gcttttccaaccagagttgaacttgatggttgttgg |
240 |
Q |
| |
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| ||||||| ||| |||||||||||||||||||||| |
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| T |
7527802 |
gattttccagccatagttgaacttgatggttgttgg |
7527767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 7714247 - 7714478
Alignment:
| Q |
10 |
cattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaacctt |
109 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
7714247 |
cattaaggtcctcaattctcttacttagttccttaattttctgaaccattttgaaagaaaagagaagttggttggatgatgagaagaagatgcaaacctt |
7714346 |
T |
|
| Q |
110 |
tttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttgagcttt |
209 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||| |||||| ||||| |||| || || |||||||||||||||| ||||||||| ||||| ||| |
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| T |
7714347 |
tttagctttcttgtgattggtcatcacttgtcacctcaggtcttccgtgttgaagtaattgagaaagtcatcggcatcataaagagcatctttgagattt |
7714446 |
T |
|
| Q |
210 |
tccaaccagagttgaacttgatggttgttggc |
241 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||| |
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|
| T |
7714447 |
tccagccatagttgaacttcatggttgttggc |
7714478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 7506547 - 7506355
Alignment:
| Q |
7 |
caacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcgaac |
106 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
7506547 |
caacattaagggcctcaattctcttactaagttcattaattttctgaaccattttgtaagaaaagagaagttggttggatgatgagaagaagatgtgaaa |
7506448 |
T |
|
| Q |
107 |
ctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatc |
199 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
7506447 |
ctttttagccttcttgttactggtcatcacttgtcgcctcaagtcttcggtgttgaagtcatcgagcaagtcatcagcatcatcaagagcatc |
7506355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 16750552 - 16750769
Alignment:
| Q |
5 |
atcaacattaaggtccttaattctcttactaagttccttaattttctgaaccattttgtaagaaaagagaagctggttggatgatgagaagaagatgcga |
104 |
Q |
| |
|
|||||| ||||| ||| ||||| ||| ||||||| ||||||||||||| |||| || | |||||||||||||||||||| || || |||||||||||| |
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|
| T |
16750552 |
atcaacgttaagaccctcaattcgcttcctaagtttcttaattttctgagccatgttaaacgaaaagagaagctggttggaagaggataagaagatgcga |
16750651 |
T |
|
| Q |
105 |
acctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagtcatcggcatcatcaagagcatccttga |
204 |
Q |
| |
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||||||||||||||||||| || |||| ||||| ||| ||||||||| || || ||||||||||||||||| ||||||||||||| ||| |||| |
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| T |
16750652 |
acctttttagccttcttgtcttttgtcagtacttgacgctacaagtcttcagtaaaaacatcatcaagcaagtcatcagcatcatcaagagtatctttga |
16750751 |
T |
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| Q |
205 |
gcttttccaaccagagtt |
222 |
Q |
| |
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|||| |||| ||| |||| |
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| T |
16750752 |
gcttctccacccatagtt |
16750769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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