View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5795-Insertion-14 (Length: 230)
Name: NF5795-Insertion-14
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795-Insertion-14 |
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| [»] chr7 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 7739524 - 7739303
Alignment:
| Q |
9 |
gttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattcc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739524 |
gttccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattcc |
7739425 |
T |
|
| Q |
109 |
ggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagt |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||| |||||||||||| |
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| T |
7739424 |
ggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctactggattgagcaaatttgcaaagagt |
7739325 |
T |
|
| Q |
209 |
tcgtttgatcataataaatgcc |
230 |
Q |
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|||||||||||||||||||||| |
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| T |
7739324 |
tcgtttgatcataataaatgcc |
7739303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 7727206 - 7726985
Alignment:
| Q |
9 |
gttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattcc |
108 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
7727206 |
gttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattcc |
7727107 |
T |
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| Q |
109 |
ggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagt |
208 |
Q |
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| T |
7727106 |
cgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagt |
7727007 |
T |
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| Q |
209 |
tcgtttgatcataataaatgcc |
230 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7727006 |
tcgtttgatcataataaatgcc |
7726985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 7731366 - 7731145
Alignment:
| Q |
9 |
gttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattcc |
108 |
Q |
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|
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
7731366 |
gttccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattcc |
7731267 |
T |
|
| Q |
109 |
ggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagt |
208 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||| |
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| T |
7731266 |
ggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctactggattgagcaagtttgcaaagagt |
7731167 |
T |
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| Q |
209 |
tcgtttgatcataataaatgcc |
230 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7731166 |
tcgtttgatcataataaatgcc |
7731145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 7713626 - 7713468
Alignment:
| Q |
72 |
ttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtgg |
171 |
Q |
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|||||||||| ||||| |||||| |||||| |||||||||||| ||| | ||||| ||||||||| ||||| || || ||||||||||| || ||||| |
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| T |
7713626 |
ttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctgtgg |
7713527 |
T |
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| Q |
172 |
tgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcc |
230 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
7713526 |
tgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcc |
7713468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 7699344 - 7699123
Alignment:
| Q |
9 |
gttccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattcc |
108 |
Q |
| |
|
|||||||||| ||||||||| | |||||| | || |||||| | |||||| || || ||||| |||||||||||||||| |||||| |||| |||||| |
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| T |
7699344 |
gttccaacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatccggcactattcc |
7699245 |
T |
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| Q |
109 |
ggcgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagt |
208 |
Q |
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||||||| ||||| ||||| |||||||| |||||||| || ||||||||||| || |||||||| || ||| |||||||||| |||||| |||| | |
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| T |
7699244 |
ggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggttgaagaagtttaacaagaat |
7699145 |
T |
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| Q |
209 |
tcgtttgatcataataaatgcc |
230 |
Q |
| |
|
|||||| ||||||||||||| |
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| T |
7699144 |
gtgtttgagcataataaatgcc |
7699123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 12908132 - 12908351
Alignment:
| Q |
11 |
tccaacagtcttagtgggtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccgg |
110 |
Q |
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||||||| |||||||| |||||||||| |||||||||| |||||| ||||| | ||| |||||||||||||||| |||||| ||||||||||||| | |
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| T |
12908132 |
tccaacaaccttagtggcccgatccccaccttcctaggccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccag |
12908231 |
T |
|
| Q |
111 |
cgtcattcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttc |
210 |
Q |
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|||| ||| | ||||||||||||| |||||||| || || |||| |||||| ||||||||||||||||||||||||||||| ||||| | |||||| |
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| T |
12908232 |
cgtcgctcgccaccctaccgtctctctcccagttgaatgttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtat |
12908331 |
T |
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| Q |
211 |
gtttgatcataataaatgcc |
230 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
12908332 |
gtttgagcataataaatgcc |
12908351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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