View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5795-Insertion-2 (Length: 888)
Name: NF5795-Insertion-2
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5795-Insertion-2 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 835; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 9 - 888
Target Start/End: Complemental strand, 44153259 - 44152377
Alignment:
| Q |
9 |
gttctttcctgtgacttattagtaggagtggtgatagagtggcattgtagttccatggagaagaagtaactccatggtgaatttgaagcatcttaattta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153259 |
gttctttcctgtgacttattagtaggagtggtgatagagtggcattgtagttccatggagaagaagtaactccatggtgaatttgaagcatcttaattta |
44153160 |
T |
|
| Q |
109 |
acttttgtcatgtgggatcctttgggcatcttgaagaaattgaattcaactctatgtcattctcttcccctctccccaaccatttttctcaaacac---- |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153159 |
acttttgtcatgtgggatcctttgggcatcttgaagaaattgaattcaactctatgtcattctcttcccctctccccaaccatttttctcaaacacttgt |
44153060 |
T |
|
| Q |
205 |
gtgtgtgtgtgagatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44153059 |
gtgtgtgtgtgagatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaa |
44152960 |
T |
|
| Q |
305 |
ctgctgctgtaaccgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44152959 |
ctgctgctgtaaccgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatac |
44152860 |
T |
|
| Q |
405 |
tacattcattccttgaggcagggctttgtattagagagaaattcgacatagcagtagccagggaatgggaatttgcagataggagaatattaggttctat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
44152859 |
tacattcattccttgaggcagggctttgtaatagagagaaattcgacatagcagtagccagggaatgggaatttgcagataggagaatataaggttctat |
44152760 |
T |
|
| Q |
505 |
cggggaattcatgataatttactacttcattgccagtataacacttggtgatttgtgtgttactgctttttggttggtggtgtttgcttcttgttatatc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44152759 |
cggggaattcatgataatttactacttcattgccagaataacacttggtgatttgtgtgttactgctttttggttggtggtgtttgcttcttgttatatc |
44152660 |
T |
|
| Q |
605 |
ttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgaggtatgtaacttttactagatattt |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44152659 |
ttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgaggtatgtaacttttactagatattt |
44152560 |
T |
|
| Q |
705 |
attttgaagtcccttgatccttctcttaagctgattcatgtatgaagtcctaggatgggtaactgtgcaatgtaccgggagatgatcgtctgtgtaaatt |
804 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44152559 |
attttgaagtcccttgatccttctcttaagctgattcatgtatgacgtcctaggatgggtaactgtgcaatgtacggggagatgatcgtctgtgtaaatt |
44152460 |
T |
|
| Q |
805 |
atttatacacaattaatcgtcttgaaaccgttgattcatcttttgctaaaaacaattcagcatctaaattatttatactcaggt |
888 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44152459 |
atttatacacaattaatcgtcttggaaccgttgattcatcttttgct-aaaacaattcagcatctaaattatttatactcaggt |
44152377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 9 - 888
Target Start/End: Complemental strand, 40897912 - 40897028
Alignment:
| Q |
9 |
gttctttcctgtgacttattagtaggagtggtgatagagtggcattgtagttccatggagaagaagtaactccatggtgaatttgaagcatcttaattta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40897912 |
gttctttcctgtgacttattagtaggagtggtgatagagtggcattgtagttccatggagaagaagtaactccatggtgaatttgaagcatcttaattta |
40897813 |
T |
|
| Q |
109 |
acttttgtcatgtgggatcctttgggcatcttgaagaaattgaattcaactctatgtcattctcttcccctctccccaaccatttttctcaaacac--gt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
40897812 |
acttttgtcatgtgggatcctttgggcatcttgaagaaattgaattcaactctatgtcattctcttcccctccccccaaccatttttctcaaacacttgt |
40897713 |
T |
|
| Q |
207 |
gtgtgtgtgagatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40897712 |
gtgtgtgtgagatctgcatatccatgttgacttattatttgttcaccatttttatattgatgggcagatttagggggaaactaaccaattgtaactaact |
40897613 |
T |
|
| Q |
307 |
gctgctgtaaccgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatacta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40897612 |
gctgctgtaaccgaatgtaataaatagaaaacagtgagaatcaggtcagacttgagacagttgagggcactctcaaatgagccctagaggttgcatacta |
40897513 |
T |
|
| Q |
407 |
cattcattccttgaggcagggctttgtattagagagaaattcgacatagcagtagccagggaatgggaatttgcagataggagaatattaggttctatcg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40897512 |
cattcattccttgaggcagggctttgtattatagagaaatttgacatagcagtagccagggaatgggaatttgcagataggagaatattaggttctatcg |
40897413 |
T |
|
| Q |
507 |
gggaattcatgataatttactacttcattgccagtataacacttggtgatttgtgtgttactgctttttggttggtggtgtttgcttcttgtt--atatc |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40897412 |
gggaattcatgataatttactacttcattgccataataacacttggtgatttgtgtgttactgctttttggttggtggtgtttgcttcttgttatatatc |
40897313 |
T |
|
| Q |
605 |
ttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgaggtatgtaacttttactagatattt |
704 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40897312 |
ttttacagcctagtattgttgtccgttagtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgaggtatgtaacttttactagatattt |
40897213 |
T |
|
| Q |
705 |
attttgaagtcccttgatccttctcttaagctgattcatgtatgaagtcctaggatgggtaactgtgcaatgtaccgggagatgatcgtctgtgtaaatt |
804 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
40897212 |
attttgaagtcccttgatccttctcttaagctgattcatgtatgaagtcctaggatgggtgactgtgcaatgtacggggagataatcgtctgtgtaaatt |
40897113 |
T |
|
| Q |
805 |
atttatacacaattaatcgtcttg--aaaccgttgattcatcttttgctaaaaacaattcagcatctaaattatttatactcaggt |
888 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
40897112 |
atttatgcacaattaatcgtcttgaaaaaccgttgattcatcttttgct-aaaacaattcagcatctaaattatttatactcaggt |
40897028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 44139608 - 44139715
Alignment:
| Q |
582 |
tggtgtttgcttcttgttatatcttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgagg |
681 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||| |||||||| |||||||| |||||| || ||||||||||||| |||||| ||||| ||||| |
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| T |
44139608 |
tggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgagg |
44139707 |
T |
|
| Q |
682 |
tatgtaac |
689 |
Q |
| |
|
|||||||| |
|
|
| T |
44139708 |
tatgtaac |
44139715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 582 - 689
Target Start/End: Original strand, 40888378 - 40888485
Alignment:
| Q |
582 |
tggtgtttgcttcttgttatatcttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgagg |
681 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||| |||||||| ||||||| |||||| || ||||||||||||| |||||| ||||| ||||| |
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|
| T |
40888378 |
tggtgtttgcttcttgttatttgttttccagctgagtattgtctatcgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgagg |
40888477 |
T |
|
| Q |
682 |
tatgtaac |
689 |
Q |
| |
|
|||||||| |
|
|
| T |
40888478 |
tatgtaac |
40888485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 40895129 - 40895167
Alignment:
| Q |
44 |
agagtggcattgtagttccatggagaagaagtaactcca |
82 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
40895129 |
agagtggcattgtagttccatgtagaagaagcaactcca |
40895167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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